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View Structure Prediction Details

Protein: GGPPC_ARATH
Organism: Arabidopsis thaliana
Length: 360 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GGPPC_ARATH.

Description E-value Query
Range
Subject
Range
GGPP1_ARATH - Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis th...
339.0 [0..9] [360..20]

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Predicted Domain #1
Region A:
Residues: [1-360]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANTVHLSSS SLFIQTRGRK YNSILSFNNL QKRTVLSLSC ALTSQGGKDM IPPKGKSNDR  60
   61 NFAFDFKSYM IRKAESVSMA LNVSVPPQDP LAIQEAVRYS LLAGGKRVRP LLCIAACELV 120
  121 GGDEATAMSA ACAVEMIHTS SLIHDDLPCM DDADLRRGKP TNHKVFGEHM AVLAGDALLA 180
  181 LAFEHMTVVS SGLVAPERMI RSVTELAKAI GTKGLVAGQV SDLCSQGLNP YDVGLERLEF 240
  241 IHLHKTAALL EAAAVLGAII GGGTEEEIQK LRKYGRCIGL LFQVVDDIID VTESTEELGK 300
  301 TAGKDVMARK LTYPRLIGLE RSREVAEKLR REAAEQLLGF DSNKVAPLVA LASYIACRHN 360
  361 

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Detection Method: PSI-BLAST
Confidence: 78.69897
Match: 2j1pA
Description: No description for 2j1pA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle