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View Structure Prediction Details

Protein: GATL4_ARATH
Organism: Arabidopsis thaliana
Length: 351 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GATL4_ARATH.

Description E-value Query
Range
Subject
Range
gi|90657589 - gi|90657589|gb|ABD96888.1| hypothetical protein [Cleome spinosa]
277.0 [0..1] [351..1]

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Predicted Domain #1
Region A:
Residues: [1-351]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRSLSYTQ LLGLLSFILL LVTTTTMAVR VGVILHKPSA PTLPVFREAP AFRNGDQCGT  60
   61 READQIHIAM TLDTNYLRGT MAAVLSLLQH STCPENLSFH FLSLPHFEND LFTSIKSTFP 120
  121 YLNFKIYQFD PNLVRSKISK SIRQALDQPL NYARIYLADI IPSSVDRIIY LDSDLVVVDD 180
  181 IEKLWHVEME GKVVAAPEYC HANFTHYFTR TFWSDPVLVK VLEGKRPCYF NTGVMVVDVN 240
  241 KWRKGMYTQK VEEWMTIQKQ KRIYHLGSLP PFLLIFAGDI KAVNHRWNQH GLGGDNFEGR 300
  301 CRTLHPGPIS LLHWSGKGKP WLRLDSRKPC IVDHLWAPYD LYRSSRHSLE E

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.045757
Match: 1zcvA
Description: apo form of a mutant of glycogenin in which Asp159 is replaced by Asn
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.98626850633439 bayes_pls_golite062009
transferase activity 0.843081158680961 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle