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View Structure Prediction Details

Protein: NAC41_ARATH
Organism: Arabidopsis thaliana
Length: 268 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAC41_ARATH.

Description E-value Query
Range
Subject
Range
gi|21105734 - gi|21105734|gb|AAM34766.1|AF509866_1 nam-like protein 3 [Petunia x hybrida]
273.0 [0..5] [263..3]
gi|28973617, gi|... - gi|9758909|dbj|BAB09485.1| NAM (no apical meristem)-like protein [Arabidopsis thaliana], gi|42567931...
264.0 [0..1] [266..5]
gi|15148914 - gi|15148914|gb|AAK84884.1|AF402603_1 NAC domain protein NAC2 [Phaseolus vulgaris]
263.0 [0..7] [250..1]
gi|66394510, gi|... - gi|66394510|gb|AAY46121.1| NAC domain protein NAC1 [Glycine max], gi|62546183|gb|AAX85978.1| NAC1 pr...
259.0 [0..7] [237..1]

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Predicted Domain #1
Region A:
Residues: [1-167]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKRSSIKNR GVLRLPPGFR FHPTDEELVV QYLRRKVTGL PLPASVIPET DVCKSDPWDL  60
   61 PGDCESEMYF FSTREAKYPN GNRSNRSTGS GYWKATGLDK QIGKKKLVVG MKKTLVFYKG 120
  121 KPPNGTRTNW VLHEYRLVDS QQDSLYGQNM NWVLCRVFLK KRSNSNS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.0
Match: 1ut4A
Description: Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [168-268]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRKEDEKEEV ENEKETETER EREEENKKST CPIFYDFMRK DTKKKRRRRR CCDLNLTPAT  60
   61 CCCCSSSTSS SSVCSSALTH TSSNDNRQEI SYRENKFCLF L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle