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View Structure Prediction Details

Protein: Y1155_ARATH
Organism: Arabidopsis thaliana
Length: 802 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for Y1155_ARATH.

Predicted Domain #1
Region A:
Residues: [1-169]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRFACFLFS TLLLSFSYAA ITPTSPLSIG QTLSSPNGIF ELGFFSPNNS RNLYVGIWFK  60
   61 GIIPRTVVWV ANRENSVTDA TADLAISSNG SLLLFDGKHS TVWSTGETFA SNGSSAELSD 120
  121 SGNLLVIDKV SGITLWQSFE HLGDTMLPYS SLMYNPGTGE KRVLSSWKS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.39794
Match: 1kj1A
Description: Lectin (agglutinin)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [170-464]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YTDPLPGEFV GYITTQVPPQ GFIMRGSKPY WRSGPWAKTR FTGVPLTDES YTHPFSVQQD  60
   61 ANGSVYFSHL QRNFKRSLLV LTSEGSLKVT HHNGTDWVLN IDVPANTCDF YGVCGPFGLC 120
  121 VMSIPPKCKC FKGFVPQFSE EWKRGNWTGG CVRRTELLCQ GNSTGRHVNV FHPVANIKPP 180
  181 DFYEFVSSGS AEECYQSCLH NCSCLAFAYI NGIGCLIWNQ ELMDVMQFSV GGELLSIRLA 240
  241 SSEMGGNQRK KTIIASIVSI SLFVTLASAA FGFWRYRLKH NAIVSKVSLQ GAWRN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.69897
Match: 1m6bA
Description: Receptor protein-tyrosine kinase Erbb-3 extracellular domain; Receptor protein-tyrosine kinase Erbb-3 Cys-rich domains
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [465-802]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DLKSEDVSGL YFFEMKTIEI ATNNFSLVNK LGQGGFGPVY KGKLQDGKEI AVKRLSSSSG  60
   61 QGKEEFMNEI LLISKLQHIN LVRILGCCIE GEERLLVYEF MVNKSLDTFI FDSRKRVEID 120
  121 WPKRFSIIQG IARGLLYLHR DSRLRIIHRD VKVSNILLDD KMNPKISDFG LARMYEGTKY 180
  181 QDNTRRIVGT LGYMSPEYAW TGVFSEKSDT YSFGVLLLEV ISGEKISRFS YDKERKNLLA 240
  241 YAWESWCENG GVGFLDKDAT DSCHPSEVGR CVQIGLLCVQ HQPADRPNTL ELLSMLTTTS 300
  301 DLPLPKEPTF AVHTSDDGSR TSDLITVNEV TQSVVLGR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.69897
Match: 2qkwB
Description: No description for 2qkwB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle