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View Structure Prediction Details

Protein: gi|8777424, gi|1...
Organism: Arabidopsis thaliana
Length: 1080 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|8777424, gi|1....

Predicted Domain #1
Region A:
Residues: [1-412]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKVRMNTAD VAAEVKCLKR LIGMRCSNVY DISPKTYMFK LLNSSGITES GESEKVLLLM  60
   61 ESGVRLHTTA YVRDKSNTPS GFTLKLRKHI RTRRLEDVRQ LGYDRIIVFQ FGLGANAHYV 120
  121 ILELYAQGNI ILTDSEYMIM TLLRSHRDDN KGFAIMSRHR YPIEICRVFE RTTVSKLQES 180
  181 LTAFVLKDHD AKQIEPKEQN GGKKGGKSND STGAKQYTLK NILGDALGYG PQLSEHIILD 240
  241 AGLVPTTKLS EDKKLDDNEI QLLVQAVIVF EDWLEDIING QKVPEGYILM QKQILANDTT 300
  301 SESGGVKKMY DEFCSILLNQ FKSRVYEKFE TFDAALDEFY SKIESQRSEQ QQKAKEDSAS 360
  361 LKLNKIRQDQ ENRVQILKKE VNHCVNMAEL IEYNLEDVDA AILAVRVALA KG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.09691
Match: 3doaA
Description: No description for 3doaA was found.

Predicted Domain #2
Region A:
Residues: [413-504]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGWDDLARMV KEEKKLGNPV AGVIDRLYLE KNCMTLLLCN NLDEMDDDEK TVPVEKVEVD  60
   61 LSLSAHGNAR RWYEMKKKQE TKQEKTVSAH EK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [505-666]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AFRAAEKKTR HQLSQEKVVA TISHMRKVHW FEKFNWFISS ENYLVISGRD AQQNEMIVKR  60
   61 YMSKGDLYVH AELHGASSTV IKNHKPEQNV PPLTLNQAGC FTVCHSQAWD SKIVTSAWWV 120
  121 YPHQVTKTAP TGEYLTVGSF MIRGKKNFLP PHPLIMGFGL LF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 48.431798
Match: PF05670.5
Description: No description for PF05670.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [667-736]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLDESSLGAH LNERRVRGEE EGMNDVVMET HAPDEHSDTE SENEAVNEVV SASGEVDLQE  60
   61 SSTALSQDTS 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [737-1080]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLDMSSSGIT EENVASATSQ LEDLLDRTLG LGAATVAGKK DTIETSKDDM EEKMKQEEKN  60
   61 AVVRDKPYMS KAERRKLKMG QSGNTAADGN TGQEKQQRKE KDVSSLSQAT KSIPDNKPAG 120
  121 EKVSRGQRGK LKKMKEKYAD QDEDERKIRM ALLASSGKPQ KTDVESQNAK TAVTEVKKPS 180
  181 EETDDAVKIC YRCKKVGHLA RDCHGKETSD MDKVVMEEDD IHEVGDEEKE KLIDVDYLTG 240
  241 NPLPTDILLY AVPVCGPYNA LQSYKYRVKA IPGSMKKGKA AKTAMNLFTH MSEASVREKE 300
  301 LMKACTDPEL MAALVGNVKI TAAGLTQLKQ KQKKGKKSGK QQHS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.39794
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle