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View Structure Prediction Details

Protein: gi|21618248, gi|...
Organism: Arabidopsis thaliana
Length: 274 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21618248, gi|....

Description E-value Query
Range
Subject
Range
Y5986_ARATH - Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=2 SV=1
223.0 [0..5] [273..101]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLEKNADF SGKTTKSATT TSFFNRSLTI HGRTVVDSGP KSHNLNPSLN RTTSITKFYT  60
   61 PVESMGTSLK GKVKNLCRLF ETSKPVKPAL AEIPQKQKSG KSLLPE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [107-274]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRISPFSSLN NSVIRLPGTE DRIVVYFTSL RGIRRTYEDC YAVRMIFRGF RVWIDERDVS  60
   61 MDIAYRKELQ IAMGEKSVSL PQVFIMGKYV GGADVIKSLF EIGELAKILK EFPMRQPGFV 120
  121 CHCCGDIRFV PCSNCSGSKK LFDEDEDRVK RCPECNENGL IRCPDCSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.69897
Match: 1ykaA
Description: Solution structure of Grx4, a monothiol glutaredoxin from E. coli.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle