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View Structure Prediction Details

Protein: TPS18_ARATH
Organism: Arabidopsis thaliana
Length: 605 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPS18_ARATH.

Description E-value Query
Range
Subject
Range
TPSGD_VITVI - (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1
715.0 [0..50] [604..9]

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Predicted Domain #1
Region A:
Residues: [1-605]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDATRTFFGL PNVHNVPLCL TSNLSLFPQR LLQKHTLPLK PAKKHHLVCV RSTKSSDDLE  60
   61 GSRPSTYFSP SLWGDHFLSV SLDRGEFDEL EREIETMKPL VKDMLMSSQS SDKEKIRLIH 120
  121 LLVSLGSSYH FDKEIQDILK HSFTKLDDII VGEDDLETIS IMFEVFRLYG HKMSCDAFDR 180
  181 FRGEDGRFKE SLAKDVRGML QLFEVAHLGT PSEDIMDEAS SFAQNHLDSW IGGNVSGATP 240
  241 HLLKHIQNSL YIPRYCNIEV LVAREYISYY EQEEGHNKIL LKFAKLNFNF CQFHYIQELK 300
  301 TLTKWWKDLD LASKLPYIRD RLVESHLGGL GPYFEPHYSL GRIIVAKIIM TMVVVDDTYD 360
  361 AHATVPEVAV LTECLQRLNI GADDKLPDYL RTVLESVFEV MGEIEQEMRP KGRSYGVKQV 420
  421 LERFKNVAKA DKQLTEWART GDVPSFDEYM KVGLVTAGMD GYAGYCFIGM EDVSEKEAFE 480
  481 WLSSNPLIIQ ALNVMFRLAN DVGTYETEIN RGEVANGLNC YMKQYGVTKE EASQELRKIY 540
  541 SNNKKVVMEE FMNSHDHVPR QVLLRCLNFA RLFDVMYTEG DGYSEPKGKI EHFMTSLYVH 600
  601 PIPLS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 5eauA
Description: 5-EPI-ARISTOLOCHENE SYNTHASE FROM NICOTIANA TABACUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.87397377711135 bayes_pls_golite062009
transferase activity 1.34929557841705 bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups 1.22586398285056 bayes_pls_golite062009
prenyltransferase activity 0.302854173865421 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle