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View Structure Prediction Details

Protein: gi|42571971, gi|...
Organism: Arabidopsis thaliana
Length: 381 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42571971, gi|....

Description E-value Query
Range
Subject
Range
gi|25315958, gi|... - pir||F96804 hypothetical protein T5M16.11 [imported] - Arabidopsis thaliana, gi|15223976|ref|NP_1778...
339.0 [0..1] [381..1]

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Predicted Domain #1
Region A:
Residues: [1-381]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENHLQHSLT IIPKPDLIKE EQRYHEDTVS LQAERILHAM TFPMVLKTAL ELGVIDMITS  60
   61 VDDGVWLSPS EIALGLPTKP TNPEAPVLLD RMLVLLASHS ILKYRTVETG DNIGSRKTER 120
  121 VYAAEPVCTF FLNRGDGLGS LATLFMVLQG EVCMKPWEHL KDMILEGKDA FTSAHGMRFF 180
  181 ELIGSNEQFA EMFNRAMSEA STLIMKKVLE VYKGFEDVNT LVDVGGGIGT IIGQVTSKYP 240
  241 HIKGINFDLA SVLAHAPFNK GVEHVSGDMF KEIPKGDAIF MKWILHDWTD EDCVKILKNY 300
  301 WKSLPEKGKV IIVEVVTPEE PKINDISSNI VFGMDMLMLA VSSGGKERSL SQFETLASDS 360
  361 GFLRCEIICH AFSYSVIELH K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.69897
Match: 1kywA
Description: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transferase activity 0.569065423404044 bayes_pls_golite062009
catalytic activity 0.486907672100804 bayes_pls_golite062009
methyltransferase activity 0.155495931533276 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.145822362574272 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle