YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|15228085, gi|...
Organism: Arabidopsis thaliana
Length: 483 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15228085, gi|....

Description E-value Query
Range
Subject
Range
gi|113548993, gi... - gi|115453843|ref|NP_001050522.1| Os03g0571900 [Oryza sativa (japonica cultivar-group)], gi|113548993...
324.0 [0..11] [475..626]

Back

Predicted Domain #1
Region A:
Residues: [1-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDPLLLGDD QLITRNLKST PTWWMNFTAE LKNVSSMAAP MATVTVSQYL LPVISVMVAG  60
   61 HCGELQLSGV TLATAFANVS GFGIMYGLVG ALETLCGQAY GAKQYTKIGT YTFSAIVSNV 120
  121 PIVVLISILW FYMDKLFVSL GQDPDISKVA GSYAVCLIPA LLAQAVQQPL TRFLQTQGLV 180
  181 LPLLYCAITT LLFHIPVCLI LVYAFGLGSN GAALAIGLSY WFNVLILALY VRFSSACEKT 240
  241 RG

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 30.0
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [243-483]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FVSDDFVLSV KQFFQYGIPS AAMTTIEWSL FELLILSSGL LPNPKLETSV LSICLTTSSL  60
   61 HCVIPMGIGA AGSTRISNEL GAGNPEVARL AVFAGIFLWF LEATICSTLL FTCKNIFGYA 120
  121 FSNSKEVVDY VTELSSLLCL SFMVDGFSSV LDGVARGSGW QNIGAWANVV AYYLLGAPVG 180
  181 FFLGFWGHMN GKGLWIGVIV GSTAQGIILA IVTACLSWEE QVNSNLKYIF GHLMNLFFTP 240
  241 Y

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 28.721246
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle