YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|4836947, gi\|1...
Organism:	Arabidopsis thaliana
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4836947, gi|1....

Description	E-value	Query Range	Subject Range
gi\|21537121 - gi\|21537121\|gb\|AAM61462.1\| photosystem II [Arabidopsis thaliana]	149.0	[0..1]	[106..1]
PST2_GOSHI - Photosystem II 5 kDa protein, chloroplastic OS=Gossypium hirsutum GN=PSBT PE=4 SV=1	119.0	[0..1]	[106..1]
gi\|90186625 - gi\|90186625\|gb\|ABD91572.1\| unknown [Brassica rapa]	96.0	[0..1]	[105..1]
gi\|113536773, gi... - gi\|115446925\|ref\|NP_001047242.1\| Os02g0581100 [Oryza sativa (japonica cultivar-group)], gi\|113536773...	47.0	[0..77]	[106..90]
gi\|81475 - gi\|81475\|pir\|\|S03277 photosystem II 5K protein - spinach (fragment)	45.0	[0..78]	[103..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASMTMTSSF LPTVSNLPAN ISSNSRRSLT VVKASGSENT TSLENKKQEQ SMKMRRDLVF  60
   61 TAAAAAVCSL AKVAMADDEP KRGTEAAKKK YAPVCVTMPT AKICRN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits