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View Structure Prediction Details

Protein: CRD1_ARATH
Organism: Arabidopsis thaliana
Length: 409 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRD1_ARATH.

Description E-value Query
Range
Subject
Range
gi|7542486 - gi|7542486|gb|AAF63476.1| putative dicarboxylate diiron protein [Arabidopsis thaliana]
704.0 [0..1] [409..1]
CRD1_EUPES - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Euphorbia esula G...
703.0 [0..1] [409..1]
gi|109450812 - gi|109450812|emb|CAK54360.1| putative desaturase-like protein [Trifolium repens]
700.0 [0..1] [409..1]
gi|92870561 - gi|92870561|gb|ABE79845.1| Ferritin-related [Medicago truncatula]
693.0 [0..1] [409..1]
gi|38503523 - gi|38503523|gb|AAR20445.2| putative leucine zipper protein [Gossypium hirsutum]
689.0 [0..1] [409..20]
gi|1052960 - gi|1052960|gb|AAB19120.1| PNIL34 [Ipomoea nil]
662.0 [0..40] [409..2]
gi|115435974, gi... - gi|6721522|dbj|BAA89564.1| putative ZIP [Oryza sativa Japonica Group], gi|6498420|dbj|BAA87823.1| pu...
662.0 [0..2] [409..5]
CRD1_HORVU - Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Hordeum vulgare G...
652.0 [0..2] [409..4]

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Predicted Domain #1
Region A:
Residues: [1-89]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAEMALVKP ISKFSSPKLS NPSKFLSGRR FSTVIRMSAS SSPPPPTTAT SKSKKGTKKE  60
   61 IQESLLTPRF YTTDFEEMEQ LFNTEINKN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.466 N/A N/A a.130.1 Chorismate mutase II
View Download 0.459 N/A N/A a.29.14 Description not found.
View Download 0.413 N/A N/A a.52.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View Download 0.392 N/A N/A a.100.1 6-phosphogluconate dehydrogenase C-terminal domain-like
View Download 0.387 N/A N/A a.159.4 Description not found.
View Download 0.344 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.323 N/A N/A a.36.1 Signal peptide-binding domain
View Download 0.289 N/A N/A a.60.5 Barrier-to-autointegration factor, BAF
View Download 0.279 N/A N/A a.60.9 lambda integrase-like, N-terminal domain

Predicted Domain #2
Region A:
Residues: [90-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNEAEFEALL QEFKTDYNQT HFVRNKEFKE AADKLQGPLR QIFVEFLERS CTAEFSGFLL  60
   61 YKELGRRLKK TNPVVAEIFS LMSRDEARHA GFLNKGLSDF NLALDLGFLT KARKYTFFKP 120
  121 KFIFYATYLS EKIGYWRYIT IYRHLKENPE FQCYPIFKYF ENWCQDENRH GDFFSALMKA 180
  181 QPQFLNDWQA KLWSRFFCLS VYVTMYLNDC QRTNFYEGIG LNTKEFDMHV IIETNRTTAR 240
  241 IFPAVLDV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.967
Match: 1nnqA
Description: rubrerythrin from Pyrococcus furiosus Pfu-1210814
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [338-409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENPEFKRKLD RMVVSYEKLL AIGETDDASF IKTLKRIPLV TSLASEILAA YLMPPVESGS  60
   61 VDFAEFEPNL VY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.853 a.4.5 "Winged helix" DNA-binding domain
View Download 0.672 a.4.5 "Winged helix" DNA-binding domain
View Download 0.638 a.7.6 Ribosomal protein S20
View Download 0.598 a.64.2 Bacteriocin AS-48
View Download 0.595 a.4.5 "Winged helix" DNA-binding domain
View Download 0.536 a.4.5 "Winged helix" DNA-binding domain
View Download 0.502 d.43.1 Elongation factor Ts (EF-Ts), dimerisation domain
View Download 0.491 a.28.1 ACP-like
View Download 0.484 a.28.1 ACP-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle