YRC Public Data Repository - Protein Structure Prediction

Protein:	WOX1_ARATH
Organism:	Arabidopsis thaliana
Length:	350 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for WOX1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|37909316 - gi\|37909316\|gb\|AAP37133.1\| WOX1 protein [Arabidopsis thaliana]	157.0	[0..1]	[350..1]
gi\|114583561 - gi\|114583561\|ref\|XP_001165390.1\| PREDICTED: paired box gene 3 isoform 6 [Pan troglodytes] gi\|31563344, gi\|... - gi\|31563344\|ref\|NP_852124.1\| paired box 3 isoform PAX3e [Homo sapiens], gi\|119591202\|gb\|EAW70796.1\| ...	132.0	[0..38]	[347..185]
gi\|74005799 - gi\|74005799\|ref\|XP_545664.2\| PREDICTED: similar to paired box gene 3 isoform PAX3d [Canis familiaris...	132.0	[0..38]	[347..169]
gi\|109101202 - gi\|109101202\|ref\|XP_001107628.1\| PREDICTED: paired box gene 3 (Waardenburg syndrome 1) isoform 7 [Ma...	128.0	[0..38]	[347..185]
gi\|86355079 - gi\|86355079\|dbj\|BAE78774.1\| paired box containing Pax3 [Pelodiscus sinensis]	126.0	[0..38]	[347..119]
gi\|109487373, gi... - gi\|62655259\|ref\|XP_343602.2\| PREDICTED: paired box gene 3 [Rattus norvegicus], gi\|109487373\|ref\|XP_0...	125.0	[0..38]	[347..185]
gi\|74180492 - gi\|74180492\|dbj\|BAE34184.1\| unnamed protein product [Mus musculus]	125.0	[0..38]	[347..185]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWTMGYNEGG ADSFNGGRKL RPLIPRLTSC PTAAVNTNSD HRFNMAVVTM TAEQNKRELM  60
   61 MLNSEPQHPP VMVSSRWNPT PDQLRVLEEL YRQGTRTPSA DHIQQITAQL RRYGKIEGKN 120
  121 VFYWFQNHKA RERQKRRRQM ETGHEETVLS TASLV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	1b72A
Description:	Homeobox protein hox-b1
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [156-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNHGFDKKDP PGYKVEQVKN WICSVGCDTQ PEKPSRDYHL EEPANIRVEH NARCGGDERR  60
   61 SFLGINTTWQ MMQLPPSFYS SSHHHHQRNL ILNSPTVSSN MSNSNNAVSA SKDTVTVSPV 120
  121 FLRTREA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [283-350]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNTETCHRNG DDNKDQEQHE DCSNGELDHQ EQTLELFPLR KEGFCSDGEK DKNISGIHCF  60
   61 YEFLPLKN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits