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View Structure Prediction Details

Protein: SCKL2_ARATH
Organism: Arabidopsis thaliana
Length: 614 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCKL2_ARATH.

Description E-value Query
Range
Subject
Range
gi|6730638 - gi|6730638|gb|AAF27059.1|AC008262_8 F4N2.16 [Arabidopsis thaliana]
471.0 [0..44] [614..1]

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Predicted Domain #1
Region A:
Residues: [1-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLSFTQFL SFPRCNADVP CLLQSHGFVK FRGERWNGKQ SFSMAAGRRK LSESAPLEEE  60
   61 GNDGNGAVVG KKPSKSVKRT TKKKVVVKDE PLEEISEFLV DNDDVLDKES IVSALKPKKT 120
  121 RTRKKAAAAS SDVEEVKTEK KVRRKRTVKK DKDVEDDLAT IMDAEVSDVE EALAVESTDT 180
  181 ESEEEEIDLS KHEGEDISHT YGWP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.23
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [205-614]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLVCCFGSAQ HAFVPSGRPA NRLLDYELHE RMRDAKWAPE KYIRAPGGCA GGVAIALASL  60
   61 GGKVAFMGKL GADDYGQAML YYLNVCKVQT RSVKIDGKRV TACSTMKISK RGRLKSTCIK 120
  121 PCAEDSLSKS EINVDVLKEA KMFYFSTHSL LDKKMMSTTI QAIKISKQLG NVIFYDLNLP 180
  181 LPLWHSSEET KSFIQEVWNL ADVIEITKQE LEFLCGIEPT EEFDTENNDI SKFVHYPPET 240
  241 VEQLWHENLK VLFVTNGTSK IHYYTKEHNG AVSGMEDVPI TPFTRDMSAS GDGIVAGLIR 300
  301 MLTVQPDLMN NKGYLERTAR YAIECGIIDQ WLLAQTRGYP PKDDMEEEED DEEEDEVESD 360
  361 PNGIRSITEK EYRTSKPYDE PDGPYVMKPV EEREYKKLEL VGSMFEDGSL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.0
Match: 1tyyA
Description: Crystal structure of aminoimidazole riboside kinase from Salmonella enterica
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.11518580948187 bayes_pls_golite062009
carbohydrate kinase activity 1.99025603598964 bayes_pls_golite062009
transferase activity 1.65599843675995 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.53929419091344 bayes_pls_golite062009
kinase activity 1.44909019943198 bayes_pls_golite062009
ribokinase activity 0.51718258191684 bayes_pls_golite062009
phosphofructokinase activity 0.14502182066038 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle