YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RH33_ARATH
Organism: Arabidopsis thaliana
Length: 845 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for RH33_ARATH.

Predicted Domain #1
Region A:
Residues: [1-246]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMAMRLPAI SRAVTEVASS PVGLRRLFCS NASRFSFLSP PARRQAEPST NLFHSGLSKR  60
   61 ITSERSLWNR IFSRNMGGGP RTFPGGLNKW QWKRMHEKKA REKENKLLDQ EKQLYEARIR 120
  121 TEIRAKMWGH PDSGEKTAKL KQSHGPMSPK EHIKTLADRF MKAGADDLWN DNDGPVKKFD 180
  181 QGSRSCSDSI DSTPIDVRRL VSATCDSMGK HRVLDSSRRG FSSMSRFKRN ESSCDEGDDV 240
  241 DAKKLD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [247-331]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLSPFSPKFS GTKEKVKSST SVVGVIRNKG LFGRRKFRKN DSSTEEDSDE EGNEGKMIGW  60
   61 MDLRKTGSSA SLGNHDIKLT KRVNR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [332-761]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVTDEELYPP LDINRVREDL SKKQSVDNVM EEKQEPHDSI YSAKRFDESC ISPLTLKALS  60
   61 ASGIVKMTRV QDATLSECLD GKDALVKAKT GTGKSMAFLL PAIETVLKAM NSGKGVHKVA 120
  121 PIFVLILCPT RELASQIAAE GKALLKNHDG IGVQTLIGGT RFRLDQQRLE SEPCQILIAT 180
  181 PGRLLDHIEN KSGLTSRLMA LKLFIVDEAD LLLDLGFKRD VEKIIDCLPR QRQSLLFSAT 240
  241 IPKEVRRVSQ LVLKRDHSYI DTIGLGCVET HDKVKQSCIV APHESHFHLV PHLLKEHINN 300
  301 MPDYKIIVFC STGMVTSLMY TLLREMKLNV REIHARKPQL HRTCVSDEFK ESNRLILVTS 360
  361 DVSARGMNYP DVTLVIQVGI PSDREQYIHR LGRTGREGKG GKGLLLIAPW ERYFLDELKD 420
  421 LPLEPIPAPD 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 88.221849
Match: 2db3A
Description: No description for 2db3A was found.

Predicted Domain #4
Region A:
Residues: [762-845]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDSRVKHQVD QSMAKIDTSI KEAAYHAWLG YYNSVRETGR DKTTLAELAN RFCHSIGLEK  60
   61 PPALFRRTAV KMGLKGISGI PIRK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.69897
Match: 1d9xA
Description: Nucleotide excision repair enzyme UvrB
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle