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View Structure Prediction Details

Protein: NAC98_ARATH
Organism: Arabidopsis thaliana
Length: 375 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NAC98_ARATH.

Description E-value Query
Range
Subject
Range
gi|21105734 - gi|21105734|gb|AAM34766.1|AF509866_1 nam-like protein 3 [Petunia x hybrida]
309.0 [0..11] [320..7]

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Predicted Domain #1
Region A:
Residues: [1-175]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIPYYHYDH GGDSQYLPPG FRFHPTDEEL ITHYLLRKVL DGCFSSRAIA EVDLNKCEPW  60
   61 QLPGRAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA TGKDREIFSS KTCALVGMKK 120
  121 TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY HFISRSSKDE WVISRVFQKT TLAST

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.0
Match: 1ut4A
Description: Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [176-375]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAVSEGGGGG GATVSVSSGT GPSKKTKVPS TISRNYQEQP SSPSSVSLPP LLDPTTTLGY  60
   61 TDSSCSYDSR STNTTVTASA ITEHVSCFST VPTTTTALGL DVNSFSRLPP PLGFDFDPFP 120
  121 RFVSRNVSTQ SNFRSFQENF NQFPYFGSSS ASTMTSAVNL PSFQGGGGVS GMNYWLPATA 180
  181 EENESKVGVL HAGLDCIWNY 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle