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View Structure Prediction Details

Protein: CP31B_ARATH
Organism: Arabidopsis thaliana
Length: 289 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CP31B_ARATH.

Description E-value Query
Range
Subject
Range
gi|56758360 - gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
245.0 [0..14] [289..93]
gi|7673355 - gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
241.0 [0..17] [289..110]
PABP2_ARATH - Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1
240.0 [0..14] [289..116]
gi|76689273 - gi|76689273|ref|XP_881129.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 1 ...
239.0 [0..14] [289..100]
gi|48734702 - gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
238.0 [0..14] [289..91]
gi|55959639, gi|... - gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens], gi|55962217|emb|CAI12298.1| poly(A) bindin...
gi|114555673 - gi|114555673|ref|XP_001170937.1| PREDICTED: poly A binding protein, cytoplasmic 4 isoform 1 [Pan tro...
238.0 [0..14] [289..91]
gi|73976775 - gi|73976775|ref|XP_539581.2| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 1 ...
238.0 [0..14] [289..91]

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Predicted Domain #1
Region A:
Residues: [1-111]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSSVLTPSL KLLAMTNSSS STLFCIPSIF NISSSESHRF NFSLSSRPVN LTLSLKSKTL  60
   61 RNSSPVVTFV SQTSNWAEEE EGEDGSIGGT SVTVDESFES EDGVGFPEPP E

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.359 N/A N/A d.105.1 Clathrin adaptor appendage, alpha and beta chain-specific domain
View Download 0.321 N/A N/A d.105.1 Clathrin adaptor appendage, alpha and beta chain-specific domain
View Download 0.321 N/A N/A d.105.1 Clathrin adaptor appendage, alpha and beta chain-specific domain
View Download 0.319 N/A N/A b.60.1 Lipocalins
View Download 0.310 N/A N/A d.58.4 Dimeric alpha+beta barrel
View Download 0.309 N/A N/A d.24.1 Pili subunits
View Download 0.305 N/A N/A b.61.3 D-aminopeptidase, middle and C-terminal domains
View Download 0.305 N/A N/A b.61.3 D-aminopeptidase, middle and C-terminal domains
View Download 0.275 N/A N/A d.58.20 NAD-binding domain of HMG-CoA reductase
View Download 0.261 N/A N/A b.61.4 Quinohemoprotein amine dehydrogenase A chain, domain 3

Predicted Domain #2
Region A:
Residues: [112-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAKLFVGNLP YDVDSQALAM LFEQAGTVEI SEVIYNRDTD QSRGFGFVTM STVEEAEKAV  60
   61 EKFNSFEVNG RRLTVNRAAP RGSRPERQPR VYDAAFRIYV GNLPWDVDSG RLERLFSEHG 120
  121 KVVDARVVSD RETGRSRGFG FVQMSNENEV NVAIAALDGQ NLEGRAIKVN VAEERTRR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.69897
Match: 1po6A
Description: Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI)
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle