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View Structure Prediction Details

Protein: PFPA2_ARATH
Organism: Arabidopsis thaliana
Length: 617 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PFPA2_ARATH.

Description E-value Query
Range
Subject
Range
gi|110738773 - gi|110738773|dbj|BAF01310.1| putative pyrophosphate-dependent phosphofructokinase alpha subunit [Ara...
647.0 [0..1] [617..1]

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Predicted Domain #1
Region A:
Residues: [1-549]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSDFGIPRE LSPLQQLRSQ YHPELPPCLQ GTTVRVELGD GTTVAKAGDA HIIARAFPHT  60
   61 LGQPLAHFLR ATAKVADAQI ITEHPVKRVG IVFCGRQAPG GHNVVWGLYE ALKVHNAKNT 120
  121 LLGFLGGSEG LFAQKTLEIT DEVLQTYKNQ GGYDMLGRTK DQIRTTEQVN AALKACTDLK 180
  181 LDSLVIIGGV TSNTDAAHLA EFFAEAKCST KVVGVPVTIN GDLKNQFVEA NVGFDTTCKV 240
  241 NSQLISNICT DALSAEKYYY FVRLMGRKHS HVALECTLQS HPNMVILGEE VTASKLTIFD 300
  301 IIKQICDAVQ ARAEQDKNHG VILIPEGLVE SIPELYALLK EIHGLLKEGV QVDNISTQLS 360
  361 SWSSALFEFL PPFIKKQLLL HPESDDSAQL SQIETEKLLA YLVETEMNKR LKEGTYKGKK 420
  421 FNAICHFFGY QARGSLPSKF DCDYAYVLGH VCYHILAAGL NGYMATVTNL KSPVNKWKCG 480
  481 AAPISAMMTV KRWSQNSGST TIGRPVIHPA SVDLKGKAYD LLRQNAQKFL MEDMYRNPGP 540
  541 VQYDGPGAD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 143.0
Match: 1kzhA
Description: Pyrophosphate-dependent phosphofructokinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.36206206719674 bayes_pls_golite062009
transferase activity 0.84629334577842 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.7560441622854 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.72507583349345 bayes_pls_golite062009
kinase activity 0.58654139962588 bayes_pls_golite062009
carbohydrate kinase activity 0.52459627481184 bayes_pls_golite062009
phosphofructokinase activity 0.52213265030802 bayes_pls_golite062009
6-phosphofructokinase activity 0.379731437688011 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [550-617]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKAVSLCVED QDYMGKIKKL QEYLDQVRTI VKPGCSQDVL KAALSVMASV TDVLTTISSS  60
   61 STSGQQFA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle