YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: DTX1_ARATH
Organism: Arabidopsis thaliana
Length: 476 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DTX1_ARATH.

Description E-value Query
Range
Subject
Range
gi|113548993, gi... - gi|115453843|ref|NP_001050522.1| Os03g0571900 [Oryza sativa (japonica cultivar-group)], gi|113548993...
321.0 [0..2] [474..622]

Back

Predicted Domain #1
Region A:
Residues: [1-247]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEPFLLRDE LLVPSQVTWH TNPLTVELKR VSRLAAPMAT VTIAQYLLPV ISVMVAGHNG  60
   61 ELQLSGVALA NSFTNVTGFS IMCGLVGALE TLCGQAYGAK QYEKIGTYAY SAIASNIPIC 120
  121 FLISILWLYI EKILISLGQD PEISRIAGSY AFWLIPALFG QAIVIPLSRF LLTQGLVIPL 180
  181 LFTAVTTLLF HVLVCWTLVF LFGLGCNGPA MATSVSFWFY AVILSCYVRF SSSCEKTRGF 240
  241 VSRDFVS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 30.318759
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [248-476]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIKQFFQYGI PSAAMICLEW WLFEILILCS GLLPNPKLET SVLSICLTIE TLHYVISAGV  60
   61 AAAVSTRVSN NLGAGNPQVA RVSVLAGLCL WIVESAFFSI LLFTCRNIIG YAFSNSKEVL 120
  121 DYVADLTPLL CLSFILDGFT AVLNGVARGS GWQHIGAWNN TVSYYLVGAP VGIYLAFSRE 180
  181 LNGKGLWCGV VVGSTVQATI LAIVTASINW KEQAEKARKR IVSTENRLA

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 35.638272
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle