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View Structure Prediction Details

Protein: GH317_ARATH
Organism: Arabidopsis thaliana
Length: 609 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GH317_ARATH.

Description E-value Query
Range
Subject
Range
gi|4468805, gi|1... - pir||T04733 auxin-regulated protein GH3 homolog F6G17.40 - Arabidopsis thaliana, gi|7270721|emb|CAB...
799.0 [0..1] [604..11]

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Predicted Domain #1
Region A:
Residues: [1-609]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPSYDPNDT EAGLKLLEDL TTNAEAIQQQ VLHQILSQNS GTQYLRAFLD GEADKNQQSF  60
   61 KNKVPVVNYD DVKPFIQRIA DGESSDIVSA QPITELLTSS GTSAGKPKLM PSTAEELERK 120
  121 TFFYSMLVPI MNKYVDGLDE GKGMYLLFIK PEIKTPSGLM ARPVLTSYYK SQHFRNRPFN 180
  181 KYNVYTSPDQ TILCQDSKQS MYCQLLCGLV QRSHVLRVGA VFASAFLRAV KFLEDHYKEL 240
  241 CADIRTGTVT SWITDSSCRD SVLSILNGPN QELADEIESE CAEKSWEGIL RRIWPKAKYV 300
  301 EVIVTGSMAQ YIPTLEFYSG GLPLVSTMYA SSECYFGINL NPLCDPADVS YTLLPNMAYF 360
  361 EFLPVDDKSH EEIHFATHSN TDDDDDALKE DLIVNLVNVE VGQYYEIVIT TFTGLYRYRV 420
  421 GDILKVTGFH NKAPQFRFVQ RRNVVLSIDT DKTSEEDLLN AVTQAKLNHL QHPSSLLLTE 480
  481 YTSYADTSSI PGHYVLFWEL KPRHSNDPPK LDDKTMEDCC SEVEDCLDYV YRRCRNRDKS 540
  541 IGPLEIRVVS LGTFDSLMDF CVSQGSSLNQ YKTPRCVKSG GALEILDSRV IGRFFSKRVP 600
  601 QWEPLGLDS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.958
Match: 1md9A
Description: Dihydroxybenzoate-AMP ligase DhbE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.927181813624701 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle