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View Structure Prediction Details

Protein: NRT23_ARATH
Organism: Arabidopsis thaliana
Length: 539 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRT23_ARATH.

Description E-value Query
Range
Subject
Range
gi|57283315 - gi|57283315|emb|CAG26716.1| nitrate transporter [Populus tremula x Populus tremuloides]
268.0 [0..7] [539..3]

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Predicted Domain #1
Region A:
Residues: [1-539]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHNHSNEEG SIGTSLHGVT AREQVFSFSV DASSQTVQSD DPTAKFALPV DSEHRAKVFN  60
   61 PLSFAKPHMR AFHLGWLSFF TCFISTFAAA PLVPIIRDNL DLTKTDIGNA GVASVSGAIF 120
  121 SRLAMGAVCD LLGARYGTAF SLMLTAPTVF SMSFVGGPSG YLGVRFMIGF CLATFVSCQY 180
  181 WTSVMFNGKI IGLVNGCAGG WGDMGGGVTQ LLMPMVFHVI KLAGATPFMA WRIAFFVPGF 240
  241 LQVVMGILVL SLGQDLPDGN LSTLQKSGQV SKDKFSKVFW FAVKNYRTWI LFVLYGSSMG 300
  301 IELTINNVIS GYFYDRFNLK LQTAGIVAAS FGMANFIARP FGGYASDVAA RVFGMRGRLW 360
  361 TLWIFQTVGA LFCIWLGRAS SLPIAILAMM LFSIGTQAAC GALFGVAPFV SRRSLGLISG 420
  421 LTGAGGNFGS GLTQLLFFSS ARFSTAEGLS LMGVMAVLCT LPVAFIHFPQ WGSMFLRPST 480
  481 DGERSQEEYY YGSEWTENEK QQGLHEGSIK FAENSRSERG RKVALANIPT PENGTPSHV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.221849
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle