Protein: | LRX1_ARATH |
Organism: | Arabidopsis thaliana |
Length: | 744 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LRX1_ARATH.
Description | E-value | Query Range |
Subject Range |
|
385.0 | [0..3] | [507..94] |
|
384.0 | [0..4] | [477..191] |
|
367.0 | [0..5] | [475..192] |
|
364.0 | [0..5] | [481..149] |
|
359.0 | [0..3] | [485..94] |
Region A: Residues: [1-426] |
1 11 21 31 41 51 | | | | | | 1 MLFPPLRSLF LFTLLLSSVC FLQIKADHDD ESDLGSDIKV DKRLKFENPK LRQAYIALQS 60 61 WKKAIFSDPF NFTANWNGSD VCSYNGIYCA PSPSYPKTRV VAGIDLNHAD MAGYLASELG 120 121 LLSDLALFHI NSNRFCGEVP LTFNRMKLLY ELDLSNNRFV GKFPKVVLSL PSLKFLDLRY 180 181 NEFEGKIPSK LFDRELDAIF LNHNRFRFGI PKNMGNSPVS ALVLADNNLG GCIPGSIGQM 240 241 GKTLNELILS NDNLTGCLPP QIGNLKKVTV FDITSNRLQG PLPSSVGNMK SLEELHVANN 300 301 AFTGVIPPSI CQLSNLENFT YSSNYFSGRP PICAASLLAD IVVNGTMNCI TGLARQRSDK 360 361 QCSSLLARPV DCSKFGCYNI FSPPPPTFKM SPEVRTLPPP IYVYSSPPPP PSSKMSPTVR 420 421 AYSPPP |
Detection Method: | |
Confidence: | 47.0 |
Match: | 2omuA |
Description: | No description for 2omuA was found. |
Region A: Residues: [427-504] |
1 11 21 31 41 51 | | | | | | 1 PPSSKMSPSV RAYSPPPPPY SKMSPSVRAY PPPPPPSPSP PPPYVYSSPP PPYVYSSPPP 60 61 PPYVYSSPPP PPYVYSSP |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.453 | d.58.7 | RNA-binding domain, RBD |
View | Download | 0.453 | d.58.7 | RNA-binding domain, RBD |
View | Download | 0.308 | d.81.1 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |
View | Download | 0.279 | d.58.36 | Sulfite reductase, domains 1 and 3 |
View | Download | 0.271 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.269 | a.4.5 | "Winged helix" DNA-binding domain |
View | Download | 0.269 | a.4.5 | "Winged helix" DNA-binding domain |
Region A: Residues: [505-674] |
1 11 21 31 41 51 | | | | | | 1 PPPYVYSSPP PPYVYSSPPP PPPSPPPPCP ESSPPPPVVY YAPVTQSPPP PSPVYYPPVT 60 61 QSPPPPSPVY YPPVTNSPPP PSPVYYPPVT YSPPPPSPVY YPQVTPSPPP PSPLYYPPVT 120 121 PSPPPPSPVY YPPVTPSPPP PSPVYYPPVT PSPPPPSPVY YPSETQSPPP |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [675-744] |
1 11 21 31 41 51 | | | | | | 1 PTEYYYSPSQ SPPPTKACKE GHPPQATPSY EPPPEYSYSS SPPPPSPTSY FPPMPSVSYD 60 61 ASPPPPPSYY |
Detection Method: | |
Confidence: | 0.972 |
Match: | 1q1qA |
Description: | Crystal structure of human pregnenolone sulfotransferase (SULT2B1a) in the presence of PAP |
Matching Structure (courtesy of the PDB): |