YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: IRX9_ARATH
Organism: Arabidopsis thaliana
Length: 351 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IRX9_ARATH.

Description E-value Query
Range
Subject
Range
gi|60657596 - gi|60657596|gb|AAX33319.1| secondary cell wall-related glycosyltransferase family 43 [Populus tremul...
428.0 [0..1] [350..1]

Back

Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLERSKKK AQVWKKAVIH FSLCFVMGFF TGFAPAGKAS FFSNFETTSY TSTKSPIPPQ  60
   61 PFENATYTQH SLLNRTLINS QSQAPAPAES REAEGETRSL S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [102-351]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKEDENQVKV TPRGLVIVVT PIITKDRYKN VLLRRMANTL RLVPPPLLWI VVEKHSDGEE  60
   61 KSSSTMLRKT GIMYRRIVFK EDFTSLESEL DHQRNLALRH IEHHKLSGIV HFAGLNNIYD 120
  121 LDFFVKIRDI EVFGTWPMAL LSANRKRVVV EGPVCESSQV LGWHLRKINN ETETKPPIHI 180
  181 SSFAFNSSIL WDPERWGRPS SVEGTKQDSI KYVKQVVLED DTKLKGLPAQ DCSKIMLWRL 240
  241 KFPTRTRLST 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 83.69897
Match: 1v82A
Description: Crystal structure of human GlcAT-P apo form
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.3567084433464 bayes_pls_golite062009
transferase activity 1.04375515050786 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle