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View Structure Prediction Details

Protein: MSRB1_ARATH
Organism: Arabidopsis thaliana
Length: 202 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSRB1_ARATH.

Description E-value Query
Range
Subject
Range
gi|60494275, gi|... - gi|60682841|ref|YP_212985.1| bifunctional methionine sulfoxide reductase A/B protein [Bacteroides fr...
277.0 [0..11] [202..160]

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Predicted Domain #1
Region A:
Residues: [1-202]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSTRLTII QSSFVSARTR LNYVSKTNHS GFACRSLSKP RNLSLSVYSM GSSSSSPKPD  60
   61 NVQEAEKNEF ASLSENEWKK RLTPEQYYIT RQKGTERAFT GEYWNSKTPG VYNCVCCDTP 120
  121 LFDSSTKFDS GTGWPSYYQP IGNNVKTKLD LSIIFMPRQE VVCAVCNAHL GHVFDDGPRP 180
  181 TGKRYCLNSA ALKLNALEKT RD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.39794
Match: 1l1dA
Description: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor 5.90194589149201 bayes_pls_golite062009
protein-methionine-R-oxide reductase activity 5.64196103816384 bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors 3.02342037380774 bayes_pls_golite062009
peptide-methionine-(S)-S-oxide reductase activity 1.80676476343543 bayes_pls_golite062009
binding 1.67290562818139 bayes_pls_golite062009
catalytic activity 0.566791077255496 bayes_pls_golite062009
nucleic acid binding 0.555078494441175 bayes_pls_golite062009
ion binding 0.415760364192452 bayes_pls_golite062009
cation binding 0.404651661251597 bayes_pls_golite062009
metal ion binding 0.404651661251597 bayes_pls_golite062009
DNA binding 0.215568693193579 bayes_pls_golite062009
transcription regulator activity 0.183261590647643 bayes_pls_golite062009
protein binding 0.0755837372617499 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle