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View Structure Prediction Details

Protein: Y5986_ARATH
Organism: Arabidopsis thaliana
Length: 390 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y5986_ARATH.

Description E-value Query
Range
Subject
Range
gi|92872813, gi|... - gi|92872813|gb|ABE81368.1| Glutaredoxin [Medicago truncatula], gi|87240364|gb|ABD32222.1| Thioredoxi...
279.0 [0..1] [389..1]

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Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCASSKNRN RCRNCKGGLS PVIVPRSYSM HVHHPAQHTG DSYHTVALTS STIGSLSLCD  60
   61 SSLRHFHKHL EDSFYKQRVS DQMGEETLIS GNGFLHGDEE KMNLDLQAKV IEAK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.154902
Match: 2diyA
Description: No description for 2diyA was found.

Predicted Domain #2
Region A:
Residues: [115-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VWSSTINEKI PKIVAKTPIV TPPGEPETIN TWELMEGLED VSPLRSPNHL RSFSFDFVRI  60
   61 QPSHDHDHDV AVSFDLPKSR FHENVKSSCR VDDLDPPDIV SRFKRKTLGK ERVVLYFTSL 120
  121 RGIRKTYEDC CNIRIILKSL GIRIDERDVS MHSGFKDELK KLLEGKFNNG VGITLPRVFL 180
  181 GNKYLGGVEE IKKLNENGEL EKLIKDCEMV ED

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.522879
Match: 1nm3A
Description: C-terminal, Grx domain of Hybrid-Prx5; N-terminal, Prx domain of Hybrid-Prx5
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.142133664747919 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [327-390]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSPGFGNECE ACGDVRFVPC ETCSGSCKLY HEGEEEDEGV TEYGFQRCPY CNENGLIRCH  60
   61 VCCE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.03
Match: 2fiyA
Description: The crystal structure of the FdhE protein from Pseudomonas aeruginosa
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle