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View Structure Prediction Details

Protein: AB18G_ARATH
Organism: Arabidopsis thaliana
Length: 708 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AB18G_ARATH.

Description E-value Query
Range
Subject
Range
gi|66850438, gi|... - gi|70996096|ref|XP_752803.1| ABC transporter [Aspergillus fumigatus Af293], gi|66850438|gb|EAL90765....
gi|159131557 - gi|159131557|gb|EDP56670.1| ABC transporter, putative [Aspergillus fumigatus A1163]
gi|44890030 - gi|44890030|emb|CAF32148.1| ABC transporter, putative [Aspergillus fumigatus]
571.0 [0..3] [706..801]

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Predicted Domain #1
Region A:
Residues: [1-59]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRVSAEILD ISHTGGNESP TLGELLKDFN DSGRKKYPGE NAPTQHILDL APAAETRSV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.69897
Match: 2hydA
Description: No description for 2hydA was found.

Predicted Domain #2
Region A:
Residues: [60-398]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFLLSFNNLS YNVVLRRRFD FSRRKTASVK TLLDDITGEA RDGEILAVLG GSGAGKSTLI  60
   61 DALAGRVAED SLKGTVTLNG EKVLQSRLLK VISAYVMQDD LLFPMLTVKE TLMFASEFRL 120
  121 PRSLPKSKKM ERVETLIDQL GLRNAADTVI GDEGHRGVSG GERRRVSIGI DIIHDPILLF 180
  181 LDEPTSGLDS TNAFMVVQVL KRIAQSGSVV IMSIHQPSAR IIGLLDRLII LSHGKSVFNG 240
  241 SPVSLPSFFS SFGRPIPEKE NITEFALDVI RELEGSSEGT RDLVEFNEKW QQNQTARATT 300
  301 QSRVSLKEAI AASVSRGKLV SGSSGANPIS METVSSYAN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.69897
Match: 1z47A
Description: Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [399-621]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPLAETFILA KRYIKNWIRT PELIGMRIGT VMVTGLLLAT VYWRLDNTPR GAQERMGFFA  60
   61 FGMSTMFYCC ADNIPVFIQE RYIFLRETTH NAYRTSSYVI SHALVSLPQL LALSIAFAAT 120
  121 TFWTVGLSGG LESFFYYCLI IYAAFWSGSS IVTFISGLIP NVMMSYMVTI AYLSYCLLLG 180
  181 GFYINRDRIP LYWIWFHYIS LLKYPYEAVL INEFDDPSRC FVK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 44.79588
Match: PF01061.15
Description: No description for PF01061.15 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [622-708]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVQVFDGTLL AEVSHVMKVK LLDTLSGSLG TKITESTCLR TGPDLLMQQG ITQLSKWDCL  60
   61 WITLAWGLFF RILFYLSLLF GSKNKRT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle