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View Structure Prediction Details

Protein: gi|4836868, gi|2...
Organism: Arabidopsis thaliana
Length: 509 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|4836868, gi|2....

Description E-value Query
Range
Subject
Range
gi|70878103 - gi|70878103|gb|EAN91386.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71648919 - gi|71648919|ref|XP_813237.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
228.0 [0..46] [507..721]

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Predicted Domain #1
Region A:
Residues: [1-167]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHTETLNLL DEIESFVSDQ LQVVSYKWLS RNFSLSSNTA KRLLKDFVEK HGKGLEVVYI  60
   61 VSGLLKNGPS DYHARLASST ELPEVEKEFN GKYSVHIYSV QASIPMDPAA IWNTEFVQAE 120
  121 ELFRQPSATD NCLKGNRFCG VSNSCVKRNI EGATENVTAP RTESVRT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [168-426]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGQSKSSSNF QKSTVPSNQG KNFQHSSSNV GHQAKSESIA APAKNQSAKS SLDKEKAFHV  60
   61 PANKKNGQGE KSVTGTGGLL KNMWGRVPVK TEDDSPTVDV KNHITNHSEP QKPSHDADKK 120
  121 GGSDDETRDA NFMRAPKDNR KRKVIFDFSD DEYEDVISLA SPSSPKVNSR PDVELSSEDS 180
  181 GPEKPDADVS PEIKSEEPEA SKEDRQNTAS VDASTTLSTE KIQAIGSEAE VNPSKRRTTA 240
  241 VPSSPKRKKV LKSRIDDRG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [427-509]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 REVTEVVWEE TETNAKKKED TNTSKKLDDG KTANAVNRAV AQKKSPAIGN TAATNAGGKA  60
   61 GSKKGGNVKD PKQGNIMSFF KKV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle