YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: GLGB1_ARATH
Organism: Arabidopsis thaliana
Length: 858 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for GLGB1_ARATH.

Predicted Domain #1
Region A:
Residues: [1-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYTISGVRF PHLPSIKKKN SSLHSFNEDL RRSNAVSFSL RKDSRSSGKV FARKPSYDSD  60
   61 SSSLATTASE KLRGHQSDSS SSASDQVQSR DTVSDDTQVL GNVDVQKTEE AQETETLDQT 120
  121 SALSTSGSIS YKEDFAKMSH SVDQEVGQRK IPPPGDGKRI YDIDPMLNSH RNHLDYRYGQ 180
  181 YRKLREEIDK NEGGLEAFSR GYEI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [205-858]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGFTRSATGI TYREWAPGAK AASLIGDFNN WNAKSDVMAR NDFGVWEIFL PNNADGSPAI  60
   61 PHGSRVKIRM DTPSGIKDSI PAWIKYSVQP PGEIPYNGVY YDPPEEDKYA FKHPRPKKPT 120
  121 SLRIYESHVG MSSTEPKINT YANFRDDVLP RIKKLGYNAV QIMAIQEHAY YASFGYHVTN 180
  181 FFAPSSRFGT PDDLKSLIDK AHELGLVVLM DIVHSHASKN TLDGLDMFDG TDGQYFHSGS 240
  241 RGYHWMWDSR LFNYGSWEVL RYLLSNARWW LEEYKFDGFR FDGVTSMMYT HHGLQVEFTG 300
  301 NYNEYFGYST DVDAVVYLML VNDLIHGLYP EAIVVGEDVS GMPAFCVPVE DGGVGFDYRL 360
  361 HMAVADKWIE LLKKRDEDWQ VGDITFTLTN RRWGEKCVVY AESHDQALVG DKTIAFWLMD 420
  421 KDMYDFMAVD RQATPRVDRG IALHKMIRLI TMGLGGEGYL NFMGNEFGHP EWIDFPRTDQ 480
  481 HLPDGRVIAG NNGSYDKCRR RFDLGDAEYL RYHGLQEFDR AMQNLEETYG FMTSEHQYIS 540
  541 RKDEGDRVIV FERGNLLFVF NFHWTNSYSD YRIGCSVPGK YKIVLDSDNS LFGGFNRLDD 600
  601 SAEFFTSDGR HDDRPCSFMV YAPCRTAVVY AAVDDDDDDE RSSLVPIGLL PEDV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 122.0
Match: 1m7xA
Description: 1,4-alpha-glucan branching enzyme, N-terminal domain N; 1,4-alpha-glucan branching enzyme; 1,4-alpha-glucan branching enzyme, central domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle