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View Structure Prediction Details

Protein: gi|21536492, gi|...
Organism: Arabidopsis thaliana
Length: 386 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21536492, gi|....

Description E-value Query
Range
Subject
Range
gi|89515459 - gi|89515459|gb|ABD75543.1| orf1ab polyprotein [Human coronavirus HKU1]
199.0 [0..83] [366..850]

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Predicted Domain #1
Region A:
Residues: [1-161]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTPKQIDFS SCGGGDNSDD TLSHRESPRN PSSKRAAASF AAEAGEETMK KKKKKKKKNL  60
   61 GPPLIVRIWN EEDELSILKG LVDYRAKTGF NPKIDWDAFY SFLGSSIVAK FSKEQVLSKI 120
  121 RKLKRRFHVH WEKISEGNDP KFTRSSDSEA FGFSSMIWGQ G

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 54.958607
Match: PF04504.5
Description: No description for PF04504.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [162-386]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EFGNDDGMDK EMVKEHDVNG NGAAENGTAR IAQENESGEE MLKEHEETLN ENGAEEIRDN  60
   61 DETARKAQQL ESESEEEMLK EHEEPFNENG AENIRDNNGT TQIAQQSESE SEEMLKEHEE 120
  121 VANTELVNEN GAAKTTENGT TGGKERHDDD DDDELCAVQD AFEAVMSQGL SGYQKKLQLE 180
  181 KLMNLGTGKR RELSDEWKAL CVEERRLNIK KLRFSAKLAE AANDS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle