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View Structure Prediction Details

Protein: MMSA_ARATH
Organism: Arabidopsis thaliana
Length: 607 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MMSA_ARATH.

Description E-value Query
Range
Subject
Range
gi|52785994, gi|... - gi|52785994|ref|YP_091823.1| DhaS [Bacillus licheniformis ATCC 14580], gi|52348496|gb|AAU41130.1| Dh...
597.0 [0..95] [592..4]

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Predicted Domain #1
Region A:
Residues: [1-109]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRVKQKNLE SYRSNGTYPP TWRNPTTSFA PDQHRVSIHS SLKSKTKRRR LYKEADDNTK  60
   61 LRSSSSTTTT TTTMLLRISG NNLRPLRPQF LALRSSWLST SPEQSTQPQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.30103
Match: 1tiwA
Description: Crystal structure of E. coli PutA proline dehydrogenase domain (residues 86-669) complexed with L-Tetrahydro-2-furoic acid
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [110-607]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPRVPNLIG GSFVESQSSS FIDVINPATQ EVVSKVPLTT NEEFKAAVSA AKQAFPLWRN  60
   61 TPITTRQRVM LKFQELIRKN MDKLAMNITT EQGKTLKDSH GDIFRGLEVV EHACGMATLQ 120
  121 MGEYLPNVSN GVDTYSIREP LGVCAGICPF NFPAMIPLWM FPVAVTCGNT FILKPSEKDP 180
  181 GASVILAELA MEAGLPDGVL NIVHGTNDTV NAICDDEDIR AVSFVGSNTA GMHIYARAAA 240
  241 KGKRIQSNMG AKNHGLVLPD ANIDATLNAL LAAGFGAAGQ RCMALSTVVF VGDAKSWEDK 300
  301 LVERAKALKV TCGSEPDADL GPVISKQAKE RICRLIQSGV DDGAKLLLDG RDIVVPGYEK 360
  361 GNFIGPTILS GVTPDMECYK EEIFGPVLVC MQANSFDEAI SIINKNKYGN GAAIFTSSGA 420
  421 AARKFQMDIE AGQIGINVPI PVPLPFFSFT GNKASFAGDL NFYGKAGVDF FTQIKTVTQQ 480
  481 WKDIPTSVSL AMPTSQKQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 145.0
Match: 1t90A
Description: Crystal structure of methylmalonate semialdehyde dehydrogenase from Bacillus subtilis
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle