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View Structure Prediction Details

Protein: NRPD2_ARATH
Organism: Arabidopsis thaliana
Length: 1172 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for NRPD2_ARATH.

Predicted Domain #1
Region A:
Residues: [1-1172]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDMDIDVKD LEEFEATTGE INLSELGEGF LQSFCKKAAT SFFDKYGLIS HQLNSYNYFI  60
   61 EHGLQNVFQS FGEMLVEPSF DVVKKKDNDW RYATVKFGEV TVEKPTFFSD DKELEFLPWH 120
  121 ARLQNMTYSA RIKVNVQVEV FKNTVVKSDK FKTGQDNYVE KKILDVKKQD ILIGSIPVMV 180
  181 KSILCKTSEK GKENCKKGDC AFDQGGYFVI KGAEKVFIAQ EQMCTKRLWI SNSPWTVSFR 240
  241 SENKRNRFIV RLSENEKAED YKRREKVLTV YFLSTEIPVW LLFFALGVSS DKEAMDLIAF 300
  301 DGDDASITNS LIASIHVADA VCEAFRCGNN ALTYVEQQIK STKFPPAESV DECLHLYLFP 360
  361 GLQSLKKKAR FLGYMVKCLL NSYAGKRKCE NRDSFRNKRI ELAGELLERE IRVHLAHARR 420
  421 KMTRAMQKHL SGDGDLKPIE HYLDASVITN GLSRAFSTGA WSHPFRKMER VSGVVANLGR 480
  481 ANPLQTLIDL RRTRQQVLYT GKVGDARYPH PSHWGRVCFL STPDGENCGL VKNMSLLGLV 540
  541 STQSLESVVE KLFACGMEEL MDDTCTPLFG KHKVLLNGDW VGLCADSESF VAELKSRRRQ 600
  601 SELPREMEIK RDKDDNEVRI FTDAGRLLRP LLVVENLQKL KQEKPSQYPF DHLLDHGILE 660
  661 LIGIEEEEDC NTAWGIKQLL KEPKIYTHCE LDLSFLLGVS CAVVPFANHD HGRRVLYQSQ 720
  721 KHCQQAIGFS STNPNIRCDT LSQQLFYPQK PLFKTLASEC LKKEVLFNGQ NAIVAVNVHL 780
  781 GYNQEDSIVM NKASLERGMF RSEQIRSYKA EVDAKDSEKR KKMDELVQFG KTHSKIGKVD 840
  841 SLEDDGFPFI GANMSTGDIV IGRCTESGAD HSIKLKHTER GIVQKVVLSS NDEGKNFAAV 900
  901 SLRQVRSPCL GDKFSSMHGQ KGVLGYLEEQ QNFPFTIQGI VPDIVINPHA FPSRQTPGQL 960
  961 LEAALSKGIA CPIQKEGSSA AYTKLTRHAT PFSTPGVTEI TEQLHRAGFS RWGNERVYNG1020
 1021 RSGEMMRSMI FMGPTFYQRL VHMSEDKVKF RNTGPVHPLT RQPVADRKRF GGIKFGEMER1080
 1081 DCLIAHGASA NLHERLFTLS DSSQMHICRK CKTYANVIER TPSSGRKIRG PYCRVCVSSD1140
 1141 HVVRVYVPYG AKLLCQELFS MGITLNFDTK LC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1i3qB
Description: RBP2
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle