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View Structure Prediction Details

Protein: CP21C_ARATH
Organism: Arabidopsis thaliana
Length: 230 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CP21C_ARATH.

Description E-value Query
Range
Subject
Range
gi|215679064, gi... - gi|50931055|ref|XP_475055.1| putative peptidylprolyl isomerase (EC 5.2.1.8) [Oryza sativa (japonica ...
gi|125550497 - gi|125550497|gb|EAY96206.1| hypothetical protein OsI_18093 [Oryza sativa Indica Group]
247.0 [0..1] [227..10]

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Predicted Domain #1
Region A:
Residues: [1-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKIKPQALL QQSKKKKGPS RISITNIVIY TLAVLLLVFV LFSAYRRWTH RSEIPTHNGR  60
   61 SVLEDAAFPG MKNVDLPRFA TLDTGKGSVT IELFKDTAPN VVDQFMKFCQ DGYFKGFLFS 120
  121 RVVKHFVIQA GDSAEFDAVK DWALDRKNID TSLKHEEFMV GTPKAKNEQG GFEFFIVSAQ 180
  181 IKDLNEKLTV FGRVSKGQDV VQEIEEVETD DQYQPKSPIE IMSVTLLQDM 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.30103
Match: 2a2nA
Description: Crystal Structure of the peptidylprolyl isomerase domain of Human PPWD1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle