YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PAP2_ARATH
Organism: Arabidopsis thaliana
Length: 310 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAP2_ARATH.

Description E-value Query
Range
Subject
Range
gi|18377868 - gi|18377868|gb|AAL67120.1| AT4g22240/T10I14_70 [Arabidopsis thaliana]
380.0 [0..1] [310..1]

Back

Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVQLSTQF SCQTRVSISP NSKSISKPPF LVPVTSIIHR PMISTGGIAV SPRRVFKVRA  60
   61 TDTGEIGSAL LAAEEAIEDV EETERLKRSL VDSLYGTDRG LSASSETRAE IGDLITQLES 120
  121 KNPTPAPTEA LFLLNGKWIL AYTSFVNLFP LLS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [154-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGIVPLIKVD EISQTIDSDN FTVQNSVRFA GPLGTNSIST NAKFEIRSPK RVQIKFEQGV  60
   61 IGTPQLTDSI EIPEYVEVLG QKIDLNPIRG LLTSVQDTAS SVARTISSQP PLKFSLPADN 120
  121 AQSWLLTTYL DKDIRISRGD GGSVFVLIKE GSPLLNP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle