Protein: | LDL2_ARATH |
Organism: | Arabidopsis thaliana |
Length: | 746 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LDL2_ARATH.
Description | E-value | Query Range |
Subject Range |
|
435.0 | [0..46] | [727..71] |
|
384.0 | [0..51] | [739..88] |
|
383.0 | [0..51] | [739..88] |
|
291.0 | [0..38] | [622..87] |
Region A: Residues: [1-157] |
1 11 21 31 41 51 | | | | | | 1 MNSPASDETA PRRNRRKVSR KNYDENAMDE LIEKQLGGKA KKKYRTKQDL EKETETEALI 60 61 ALSVGFPIDE LLEEEIRAGV VRELGGKEQN DYIVVRNHIV ARWRGNVGIW LLKDQIRETV 120 121 SSDFEHLISA AYDFLLFNGY INFGVSPLFA PYIPEEG |
Detection Method: | |
Confidence: | 27.30103 |
Match: | 1h7xA |
Description: | Dihydropyrimidine dehydrogenase, N-terminal domain; Dihydropyrimidine dehydrogenase, domain 4; Dihydropyrimidine dehydrogenase, domain 3; Dihydropyrimidine dehydrogenase, domain 2; Dihydropyrimidine dehydrogenase, C-terminal domain |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [158-544] |
1 11 21 31 41 51 | | | | | | 1 TEGSVIVVGA GLAGLAAARQ LLSFGFKVLV LEGRSRPGGR VYTQKMGGKD RFAAVELGGS 60 61 VITGLHANPL GVLARQLSIP LHKVRDNCPL YNSEGVLVDK VADSNVEFGF NKLLDKVTEV 120 121 REMMEGAAKK ISLGEVLETL RVLYGVAKDS EERKLFDWHL ANLEYANAGC LSNLSAAYWD 180 181 QDDPYEMGGD HCFLAGGNWR LINALAEGLP IIYGKSVDTI KYGDGGVEVI SGSQIFQADM 240 241 ILCTVPLGVL KKRSIKFEPE LPRRKQAAID RLGFGLLNKV AMLFPSVFWG DELDTFGCLN 300 301 ESSINRGEFF LFYAYHTVSG GPALVALVAG EAAQRFECTE PSVLLHRVLK KLRGIYGPKG 360 361 VVVPDPIQTV CTRWGSDPLS YGSYSHV |
Detection Method: | |
Confidence: | 15.69897 |
Match: | 2bi7A |
Description: | udp-galactopyranose mutase from Klebsiella pneumoniae oxidised FAD |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [545-614] |
1 11 21 31 41 51 | | | | | | 1 RVGSSGVDYD ILAESVSNRL FFAGEATTRQ HPATMHGAYL SGLREASKIL HVANYLRSNL 60 61 KKPVQRYSGV |
Detection Method: | |
Confidence: | 46.0 |
Match: | 2v1dA |
Description: | No description for 2v1dA was found. |
Region A: Residues: [615-746] |
1 11 21 31 41 51 | | | | | | 1 NINVLEDMFK RPDIAIGKLS FVFNPLTDDP KSFGLVRVCF DNFEEDPTNR LQLYTILSRE 60 61 QANKIKELDE NSNESKLSCL MNTLGLKLMG ANSVLDTGGA LISVIANARR GRSRSHVVAG 120 121 QCNLPLNPLH FN |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.581 | c.36.1 | Thiamin diphosphate-binding fold (THDP-binding) |
View | Download | 0.542 | c.36.1 | Thiamin diphosphate-binding fold (THDP-binding) |
View | Download | 0.499 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
View | Download | 0.491 | c.55.5 | MTH1175-like |
View | Download | 0.474 | c.36.1 | Thiamin diphosphate-binding fold (THDP-binding) |
View | Download | 0.474 | c.36.1 | Thiamin diphosphate-binding fold (THDP-binding) |
View | Download | 0.472 | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
View | Download | 0.472 | c.59.1 | MurD-like peptide ligases, peptide-binding domain |
View | Download | 0.411 | a.1.1 | Globin-like |
View | Download | 0.375 | a.41.1 | Domain of poly(ADP-ribose) polymerase |