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View Structure Prediction Details

Protein: gi|22136272, gi|...
Organism: Arabidopsis thaliana
Length: 469 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22136272, gi|....

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
419.0 [0..14] [469..1223]
gi|17225208 - gi|17225208|gb|AAL37300.1|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]
417.0 [0..54] [468..822]
gi|53764690, gi|... - gi|75908402|ref|YP_322698.1| peptidase C14, caspase catalytic subunit p20 [Anabaena variabilis ATCC ...
408.0 [0..2] [469..1025]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=...
gi|25530855 - pir||AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)
408.0 [0..16] [468..1043]
gi|35214926, gi|... - gi|37523920|ref|NP_927297.1| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi|35214...
403.0 [0..9] [469..569]
gi|115443476, gi... - gi|115443476|ref|XP_001218545.1| hypothetical protein ATEG_09923 [Aspergillus terreus NIH2624], gi|1...
403.0 [0..62] [468..637]

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Predicted Domain #1
Region A:
Residues: [1-111]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRNVKTKAK RKNKKKAEAS SSEIPSIPTR VWQPGVDTLE DGEELQCDPS AYNSLHGFHV  60
   61 GWPCLSFDIL GDKLGLNRTE FPHTLYMVAG TQAEKAAHNS IGLFKITNVS G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [112-469]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRRDVVPKTF GNGEDEDEDD EDDSDSDDDD GDEASKTPNI QVRRVAHHGC VNRIRAMPQN  60
   61 SHICVSWADS GHVQVWDMSS HLNALAESET EGKDGTSPVL NQAPLVNFSG HKDEGYAIDW 120
  121 SPATAGRLLS GDCKSMIHLW EPASGSWAVD PIPFAGHTAS VEDLQWSPAE ENVFASCSVD 180
  181 GSVAVWDIRL GKSPALSFKA HNADVNVISW NRLASCMLAS GSDDGTFSIR DLRLIKGGDA 240
  241 VVAHFEYHKH PITSIEWSAH EASTLAVTSG DNQLTIWDLS LEKDEEEEAE FNAQTKELVN 300
  301 TPQDLPPQLL FVHQGQKDLK ELHWHNQIPG MIISTAGDGF NILMPYNIQN TLPSELPA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 62.69897
Match: 2gnqA
Description: No description for 2gnqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle