YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3738333, gi\|1...
Organism:	Arabidopsis thaliana
Length:	312 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3738333, gi|1....

Description	E-value	Query Range	Subject Range
gi\|85702892, gi\|... - gi\|85702892\|ref\|ZP_01033996.1\| translation initiation factor [Roseovarius sp. 217], gi\|85671820\|gb\|E...	259.0	[0..35]	[253..2]
gi\|25028065, gi\|... - gi\|25028065\|ref\|NP_738119.1\| translation initiation factor IF-3 [Corynebacterium efficiens YS-314], ...	256.0	[0..39]	[256..2]
gi\|56381095, gi\|... - gi\|56421253\|ref\|YP_148571.1\| translation initiation factor IF-3 [Geobacillus kaustophilus HTA426], g...	253.0	[0..60]	[255..38]
gi\|71369942, gi\|... - gi\|71369942\|ref\|ZP_00660335.1\| Initiation factor 3 [Nocardioides sp. JS614], gi\|71154334\|gb\|EAO04868...	251.0	[0..40]	[297..100]
gi\|83846241, gi\|... - gi\|83943233\|ref\|ZP_00955693.1\| translation initiation factor [Sulfitobacter sp. EE-36], gi\|83846241\|... gi\|83954368, gi\|... - gi\|83954368\|ref\|ZP_00963088.1\| translation initiation factor [Sulfitobacter sp. NAS-14.1], gi\|838414...	248.0	[0..60]	[254..5]
gi\|67986973, gi\|... - gi\|69286435\|ref\|ZP_00617483.1\| Initiation factor 3 [Kineococcus radiotolerans SRS30216], gi\|67986973...	248.0	[0..46]	[306..28]
gi\|148655186, gi... - gi\|148655186\|ref\|YP_001275391.1\| translation initiation factor IF-3 [Roseiflexus sp. RS-1], gi\|14856...	246.0	[0..61]	[298..4]
gi\|113938217, gi... - gi\|159901151\|ref\|YP_001547398.1\| translation initiation factor IF-3 [Herpetosiphon aurantiacus ATCC ...	244.0	[0..79]	[293..7]
IF3_STRAW - Translation initiation factor IF-3 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM ... IF3_STRAW - Translation initiation factor IF-3 OS=Streptomyces avermitilis GN=infC PE=3 SV=1	243.0	[0..81]	[290..5]
gi\|18377498, gi\|... - gi\|18417644\|ref\|NP_567851.1\| translation initiation factor 3 (IF-3) family protein [Arabidopsis thal...	243.0	[0..1]	[284..1]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGITSSTVG FNAVFTGITK TVSSHSLFSV DSKLCSLRLS KTELSFTNLT PSPRRAFAVT  60
   61 CRFGGGGGGY RFSGDNRRGR PKEAE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [86-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDEALDISSI RSATVRLIDG QQNMLGLVSK DEAVRMADDA ELDLVILSPD ADPPVVKMMD  60
   61 YSKYRYEQQK RKKDQQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.045757
Match:	1tifA
Description:	TRANSLATION INITIATION FACTOR 3 N-TERMINAL DOMAIN
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [163-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTTRMDLKEL KMGYNIDQHD YSVRLRAAQK FLQDGDKVKV IVSMKGRENE FRNIAIELLR  60
   61 RFQTEIGELA TEESKNFRDR NMFIILVPNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.522879
Match:	1tigA
Description:	TRANSLATION INITIATION FACTOR 3 C-TERMINAL DOMAIN
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [253-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EMIRKPQEPP TRKKKKTAEN EASASAAEIT AEPEPEPEPE PEPEPEPEPE PEPEPLQIDS  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.58
Match:	1q1qA
Description:	Crystal structure of human pregnenolone sulfotransferase (SULT2B1a) in the presence of PAP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits