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View Structure Prediction Details

Protein: LHTL2_ARATH
Organism: Arabidopsis thaliana
Length: 441 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LHTL2_ARATH.

Description E-value Query
Range
Subject
Range
gi|68373624 - gi|68373624|ref|XP_692242.1| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...
240.0 [0..15] [402..961]

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Predicted Domain #1
Region A:
Residues: [1-441]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKSQSSPTK DASTKQKNVD DWLPITSSRN AKWWYSAFHN VTAMVGAGVL SLPYAMSNLG  60
   61 WGPGVTIMIM SWLITFYTLW QMVQMHEMVP GKRFDRYHEL GQHAFGEKLG LWIVVPQQLI 120
  121 VEVGVDIVYM VTGGKSLKKI HDLLCTDCKN IRTTYWIMIF ASIHFVLAHL PNFNSISIVS 180
  181 LAAAVMSLSY STIAWATSVK KGVHPNVDYS SRASTTSGNV FNFLNALGDV AFAYAGHNVV 240
  241 LEIQATIPST PEKPSKIAMW KGVVVAYIVV AICYFPVAFV CYYIFGNSVD DNILMTLEKP 300
  301 IWLIAIANAF VVVHVIGSYQ IYAMPVFDML ETFLVKKMMF APSFKLRFIT RTLYVAFTMF 360
  361 VAICIPFFGG LLGFFGGFAF APTTYYLPCI MWLCIKKPKK YGLSWCINWF CIVVGVILTI 420
  421 LAPIGGLRTI IISAKNYEFF S

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.24
Match: 2a65A
Description: Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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