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View Structure Prediction Details

Protein: PTP1_ARATH
Organism: Arabidopsis thaliana
Length: 340 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTP1_ARATH.

Description E-value Query
Range
Subject
Range
gi|9507011, gi|2... - gi|9507011|ref|NP_062013.1| protein tyrosine phosphatase, receptor type, S [Rattus norvegicus], gi|2...
335.0 [0..5] [338..1240]

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Predicted Domain #1
Region A:
Residues: [1-340]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGKTSSAA NLFTGSTRFD LSSADSPPSK LSLSSDQLNH CHQALGVFRG KIQNPDSIAH  60
   61 EFTGLQANRM WPSELLLNST VAMNSVNVEK NRYSDVVPFD KNRIVLNPCK DSSAKGYVNA 120
  121 SLIKTSESES ISQFIATQGP LPHTMEDFWE MVIQQHCPII VMLTRLVDNN RTVKCGDYFQ 180
  181 DEDGPREFGN ISLTTKWIKT TDTSLMLRNL EVNYKETEDQ PMSVLHIQYP EWPDHGVPKD 240
  241 TVAVREILKR LYQVPPSLGP IIVHCSAGIG RTGTYCAIHN TIQRILAGDM SALDLAKTVA 300
  301 LFRKQRIGMV QTMDQYFFCY NAIVDELEDL TAGTNAGTSS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.522879
Match: 2fh7A
Description: Crystal structure of the phosphatase domains of human PTP SIGMA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle