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View Structure Prediction Details

Protein: SBT39_ARATH
Organism: Arabidopsis thaliana
Length: 756 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SBT39_ARATH.

Description E-value Query
Range
Subject
Range
SBT38_ARATH - Subtilisin-like protease SBT3.8 OS=Arabidopsis thaliana GN=SBT3.8 PE=3 SV=1
621.0 [0..1] [756..1]

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Predicted Domain #1
Region A:
Residues: [1-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTILFLAL FLSIVLNVQI SFVVAESKVY VVYLGEKEHD NPESVTESHH QMLWSLLGSK  60
   61 EAVLDSIVYS YRHGFSGFAA KLTESQAQQI SELPEVVQVI PNTLYEMTTT RTWDYLG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.0
Match: 1r6vA
Description: Crystal structure of fervidolysin from Fervidobacterium pennivorans, a keratinolytic enzyme related to subtilisin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [118-756]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSPGNSDSLL QKANMGYNVI VGVIDSGVWP ESEMFNDKGF GPIPSRWKGG CESGELFNAS  60
   61 IHCNRKLIGA KYFVDGLVAE FGVVNRTQNP EYLSPRDFAG HGTHVASTIG GSFLPNVSYV 120
  121 GLGRGTARGG APGVHIAVYK ACWSGYCSGA DVLKAMDEAI HDGVDILSLS LGPSVPLFPE 180
  181 TEHTSVGAFH AVAKGIPVVI AAGNAGPTAQ TISNVAPWVL TVAATTQDRS FPTAITLGNN 240
  241 ITILGQAIYG GPELGFVGLT YPESPLSGDC EKLSANPNST MEGKVVLCFA ASTPSNAAIA 300
  301 AVINAGGLGL IMAKNPTHSL TPTRKFPWVS IDFELGTDIL FYIRSTRSPI VKIQASKTLF 360
  361 GQSVSTKVAT FSSRGPNSVS PAILKPDIAA PGVNILAAIS PNSSINDGGF AMMSGTSMAT 420
  421 PVVSGVVVLL KSLHPDWSPS AIKSAIVTTA WRTDPSGEPI FADGSSRKLA DPFDYGGGLI 480
  481 NPEKAVKPGL IYDMTTDDYV MYMCSVDYSD ISISRVLGKI TVCPNPKPSV LDLNLPSITI 540
  541 PNLRGEVTLT RTVTNVGPVN SVYKVVIDPP TGINVAVTPA ELVFDYTTTK RSFTVRVSTT 600
  601 HKVNTGYYFG SLTWTDNMHN VAIPVSVRTQ ILQRYYDEN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.0
Match: 1xf1A
Description: Structure of C5a peptidase- a key virulence factor from Streptococcus
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle