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View Structure Prediction Details

Protein: AKH2_ARATH
Organism: Arabidopsis thaliana
Length: 916 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for AKH2_ARATH.

Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLKPSFTV SPPNSNPIRF GSFPPQCFLR VPKPRRLILP RFRKTTGGGG GLIRCELPDF  60
   61 HLSATATTVS GVSTVNLVDQ VQIP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [85-554]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGEMWSVHKF GGTCVGNSQR IRNVAEVIIN DNSERKLVVV SAMSKVTDMM YDLIRKAQSR  60
   61 DDSYLSALEA VLEKHRLTAR DLLDGDDLAS FLSHLHNDIS NLKAMLRAIY IAGHASESFS 120
  121 DFVAGHGELW SAQMLSYVVR KTGLECKWMD TRDVLIVNPT SSNQVDPDFG ESEKRLDKWF 180
  181 SLNPSKIIIA TGFIASTPQN IPTTLKRDGS DFSAAIMGAL LRARQVTIWT DVDGVYSADP 240
  241 RKVNEAVILQ TLSYQEAWEM SYFGANVLHP RTIIPVMRYN IPIVIRNIFN LSAPGTIICQ 300
  301 PPEDDYDLKL TTPVKGFATI DNLALINVEG TGMAGVPGTA SDIFGCVKDV GANVIMISQA 360
  361 SSEHSVCFAV PEKEVNAVSE ALRSRFSEAL QAGRLSQIEV IPNCSILAAV GQKMASTPGV 420
  421 SCTLFSALAK ANINVRAISQ GCSEYNVTVV IKREDSVKAL RAVHSRFFLS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 112.0
Match: 3c1mA
Description: No description for 3c1mA was found.

Predicted Domain #3
Region A:
Residues: [555-916]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTTLAMGIVG PGLIGATLLD QLRDQAAVLK QEFNIDLRVL GITGSKKMLL SDIGIDLSRW  60
   61 RELLNEKGTE ADLDKFTQQV HGNHFIPNSV VVDCTADSAI ASRYYDWLRK GIHVITPNKK 120
  121 ANSGPLDQYL KLRDLQRKSY THYFYEATVG AGLPIISTLR GLLETGDKIL RIEGICSGTL 180
  181 SYLFNNFVGD RSFSEVVTEA KNAGFTEPDP RDDLSGTDVA RKVIILARES GLKLDLADLP 240
  241 IRSLVPEPLK GCTSVEEFME KLPQYDGDLA KERLDAENSG EVLRYVGVVD AVNQKGTVEL 300
  301 RRYKKEHPFA QLAGSDNIIA FTTTRYKDHP LIVRGPGAGA QVTAGGIFSD ILRLASYLGA 360
  361 PS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 67.522879
Match: 1q7gA
Description: Homoserine Dehydrogenase in complex with suicide inhibitor complex NAD-5-hydroxy-4-Oxonorvaline
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle