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View Structure Prediction Details

Protein: BAT1_ARATH
Organism: Arabidopsis thaliana
Length: 516 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BAT1_ARATH.

Description E-value Query
Range
Subject
Range
gi|85095443 - gi|85095443|ref|XP_960090.1| general amino-acid permease GAP1 [Neurospora crassa OR74A]
gi|32410409, gi|... - gi|32410409|ref|XP_325685.1| hypothetical protein [Neurospora crassa], gi|28921549|gb|EAA30854.1| ge...
313.0 [0..29] [516..145]

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Predicted Domain #1
Region A:
Residues: [1-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLGGDQSFV PVMDSGQVRL KELGYKQELK RDLSVFSNFA ISFSIISVLT GITTTYNTGL  60
   61 RFGGTVTLVY GWFLAGSFTM CVGLSMAEIC SSYPTSGGLY YWSAMLAGPR WAPLASWMTG 120
  121 WFNIVGQWAV TASVDFSLAQ LIQVIVLLST GGRNGGGYKG SDFVVIGIHG GILFIHALLN 180
  181 SLPISVLSFI GQLAALWNLL GVLVLMILIP LVSTERATTK FVFTNFNTDN GLGITSYAYI 240
  241 FVLGLLMSQY TITGYDASAH MTEETVDADK NGPRGIISAI GISILFGWGY ILGISYAVTD 300
  301 IPSLLSETNN SGGYAIAEIF YLAFKNRFGS GTGGIVCLGV VAVAVFFCGM SSVTSNSRMA 360
  361 YAFSRDGAMP MSPLWHKVNS REVPINAVWL SALISFCMAL TSLGSIVAFQ AMVSIATIGL 420
  421 YIAYAIPIIL RVTLARNTFV PG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.47
Match: 2a65A
Description: Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [443-516]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFSLGKYGMV VGWVAVLWVV TISVLFSLPV AYPITAETLN YTPVAVAGLV AITLSYWLFS  60
   61 ARHWFTGPIS NILS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle