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View Structure Prediction Details

Protein: KCS1_ARATH
Organism: Arabidopsis thaliana
Length: 528 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KCS1_ARATH.

Description E-value Query
Range
Subject
Range
gi|110741971 - gi|110741971|dbj|BAE98925.1| putative fatty acid elongase 3-ketoacyl-CoA synthase 1 [Arabidopsis tha...
493.0 [0..1] [528..1]

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Predicted Domain #1
Region A:
Residues: [1-79]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL  60
   61 FFLIILPLTG TVLVQLTGL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [80-528]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFDTFSELWS NQAVQLDTAT RLTCLVFLSF VLTLYVANRS KPVYLVDFSC YKPEDERKIS  60
   61 VDSFLTMTEE NGSFTDDTVQ FQQRISNRAG LGDETYLPRG ITSTPPKLNM SEARAEAEAV 120
  121 MFGALDSLFE KTGIKPAEVG ILIVNCSLFN PTPSLSAMIV NHYKMREDIK SYNLGGMGCS 180
  181 AGLISIDLAN NLLKANPNSY AVVVSTENIT LNWYFGNDRS MLLCNCIFRM GGAAILLSNR 240
  241 RQDRKKSKYS LVNVVRTHKG SDDKNYNCVY QKEDERGTIG VSLARELMSV AGDALKTNIT 300
  301 TLGPMVLPLS EQLMFLISLV KRKMFKLKVK PYIPDFKLAF EHFCIHAGGR AVLDEVQKNL 360
  361 DLKDWHMEPS RMTLHRFGNT SSSSLWYEMA YTEAKGRVKA GDRLWQIAFG SGFKCNSAVW 420
  421 KALRPVSTEE MTGNAWAGSI DQYPVKVVQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 85.09691
Match: 1i8bA
Description: Chalcone synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.61499311836466 bayes_pls_golite062009
transferase activity 1.02674433736465 bayes_pls_golite062009
transferase activity, transferring acyl groups 0.95018443969363 bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups 0.71137845857094 bayes_pls_golite062009
acyltransferase activity 0.57223728364314 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle