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View Structure Prediction Details

Protein: gi|25402681, gi|...
Organism: Arabidopsis thaliana
Length: 1025 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|25402681, gi|....

Predicted Domain #1
Region A:
Residues: [1-393]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASGPKSSG PRGFGRRTTV GSAQKRTQKK NGEKDSNATS TATNEVSGIS KLPAAKVDVQ  60
   61 KQSSVVLNER NVLDRSDIED GSDRLDKKTT DDDDLLEQKL KLERENLRRK EIETLAAENL 120
  121 ARGDRMFVYP VIVKPDEDIE VFLNRNLSTL NNEPDVLIMG AFNEWRWKSF TRRLEKTWIH 180
  181 EDWLSCLLHI PKEAYKMDFV FFNGQSVYDN NDSKDFCVEI KGGMDKVDFE NFLLEEKLRE 240
  241 QEKLAKEEAE RERQKEEKRR IEAQKAAIEA DRAQAKAETQ KRRELLQPAI KKAVVSAENV 300
  301 WYIEPSDFKA EDTVKLYYNK RSGPLTNSKE LWLHGGFNNW VDGLSIVVKL VNAELKDVDP 360
  361 KSGNWWFAEV VVPGGALVID WVFADGPPKG AFL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.522879
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [394-575]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YDNNGYQDFH ALVPQKLPEE LYWLEEENMI FRKLQEDRRL KEEVMRAKME KTARLKAETK  60
   61 ERTLKKFLLS QKDVVYTEPL EIQAGNPVTV LYNPANTVLN GKPEVWFRGS FNRWTHRLGP 120
  121 LPPQKMEATD DESSHVKTTA KVPLDAYMMD FVFSEKEDGG IFDNKNGLDY HLPVVGGISK 180
  181 EP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 82.537602
Match: PF07036.3
Description: No description for PF07036.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [576-1025]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLHIVHIAVE MAPIAKVGGL GDVVTSLSRA VQELNHNVDI VFPKYDCIKH NFVKDLQFNR  60
   61 SYHWGGTEIK VWHGKVEGLS VYFLDPQNGL FQRGCVYGCA DDAGRFGFFC HAALEFLLQG 120
  121 GFHPDILHCH DWSSAPVSWL FKDHYTQYGL IKTRIVFTIH NLEFGANAIG KAMTFADKAT 180
  181 TVSPTYAKEV AGNSVISAHL YKFHGIINGI DPDIWDPYND NFIPVPYTSE NVVEGKRAAK 240
  241 EELQNRLGLK SADFPVVGII TRLTHQKGIH LIKHAIWRTL ERNGQVVLLG SAPDPRIQND 300
  301 FVNLANQLHS SHGDRARLVL TYDEPLSHLI YAGADFILVP SIFEPCGLTQ LIAMRYGAVP 360
  361 VVRKTGGLFD TVFDVDHDKE RAQAQVLEPN GFSFDGADAP GVDYALNRAI SAWYDGREWF 420
  421 NSLCKTVMEQ DWSWNRPALE YLELYHSARK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 101.0
Match: 2qzsA
Description: No description for 2qzsA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle