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View Structure Prediction Details

Protein: gi|7485468, gi|1...
Organism: Arabidopsis thaliana
Length: 466 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7485468, gi|1....

Description E-value Query
Range
Subject
Range
gi|113548993, gi... - gi|115453843|ref|NP_001050522.1| Os03g0571900 [Oryza sativa (japonica cultivar-group)], gi|113548993...
309.0 [0..4] [465..622]

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Predicted Domain #1
Region A:
Residues: [1-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREEREDMLS WPLIGEKEKR SRFVKEEVEK QLLLSGPLIA VSLLQFCLQI ISVMFVGHLG  60
   61 SLPLSAASIA TSFASVTGFT FLMGTASAMD TVCGQSYGAK MYGMLGIQMQ RAMLVLTLLS 120
  121 VPLSIVWANT EHFLVFFGQD KSIAHLSGSY ARFMIPSIFA YGLLQCLNRF LQAQNNVIPV 180
  181 VICSGVTTSL HVIICWVLVL KSGLGFRGAA VANAISYWLN VILLSCYVKF 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 47.113509
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [231-466]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPSCSLTWTG FSKEARRDII PFMKLVIPSA FMVCSLEMWS FELLVLSSGL LPNPVLETSC  60
   61 PRTVWMIPFG LSGAASTRVS NELGSGNPKG AKLAVRVVLS FSIVESILVG TVLILIRKIW 120
  121 GFAYSSDPEV VSHVASMLPI LALGHSLDSF QTVLSGVARG CGWQKIGAFV NLGSYYLVGV 180
  181 PFGLLLGFHF HVGGRGLWLG IICALIVQGV CLSLITFFTN WDEEVKPSPC LVYFYF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 25.443697
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle