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View Structure Prediction Details

Protein: RH55_ARATH
Organism: Arabidopsis thaliana
Length: 465 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RH55_ARATH.

Description E-value Query
Range
Subject
Range
gi|91785132, gi|... - gi|91785132|ref|YP_560338.1| putative ATP-dependent RNA helicase 1 [Burkholderia xenovorans LB400], ...
318.0 [0..16] [464..24]

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Predicted Domain #1
Region A:
Residues: [1-383]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSSPPNTII EEAPPRFSEL KPPLSEDIIE ALDRSGFEVC TPVQAETIPF LCSHKDVVVD  60
   61 AATGSGKTLA FLLPFIEIIR RSNSYPPKPH QVMGVIISPT RELSAQIHKV ARAVRLDFAK 120
  121 CREVEADMNT LEEEGANLLI GTPGRLSDMM KRMEFLDFRN LEILILDEAD RLLDMGFQKQ 180
  181 VNYIISRLPK QRRTGLFSAT QTQAVADLAK AGLRNPYLKC EADQKSSQLV HLLIENKNKK 240
  241 LVVFFMTCAC VDYWGLVISK IPSLKSISFF PTHGKMDQKG RDTALASFTE ASSGVLLCTD 300
  301 VAARGLDIPG IVYIRSLAIK DREVLEKGLK AFVSFVRAYK EHQCSYIFSW KGLEIGKLAM 360
  361 GYGILSFPYI SEVKQDRIGI VGF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.39794
Match: 2db3A
Description: No description for 2db3A was found.

Predicted Domain #2
Region A:
Residues: [384-465]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPVQGITFED IKFKNKSREK QRQQNLLARK DKLQQEKRGK RKKSSKEAVD DSNKASRKRK  60
   61 LTGRQRQTIQ TAQDEEEMNL RL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.30103
Match: 2d7dA
Description: No description for 2d7dA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle