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View Structure Prediction Details

Protein: FTSH9_ARATH
Organism: Arabidopsis thaliana
Length: 806 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for FTSH9_ARATH.

Predicted Domain #1
Region A:
Residues: [1-173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSIELLSPL IHDKFRFSTC CSTSSLLYLH ASSFFRDRSF GFRQNPNRFV SNSSIQLPQS  60
   61 VPGSINQERF NLWQGFSRKK STSSSRTIVN CQEGDQKASS SEGEGKTNKD KGRKQGKNEL 120
  121 WWSKGKKWQW KPIIQAQEIG VMLLQLGIVM FVVRLLRPGI PLPGSEPRTQ TTF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [174-321]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVPYSDFLS KVNNDEVQKV EVDGFHVLFK LKDDGNLQES ETSSSSIKLS ESSETMLRSV  60
   61 APTKRVVYST TRPRDIKTPY EKMLENNVEF GSPDKRSGGF FNSGLIVLFY IAVLAGLLHR 120
  121 FPVNFSQSTT GQLRTRKSGG PGGGKVSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 77.0
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [322-806]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGETITFADV AGVDEAKEEL EEIVEFLKNP DRYVRLGARP PRGVLLVGLP GTGKTLLAKA  60
   61 VAGESDVPFI SCSASEFVEL YVGMGASRVR DLFARAKKEA PSIIFIDEID AVAKSRDGKF 120
  121 RMVSNDEREQ TLNQLLTEMD GFDSSSAVIV LGATNRADVL DPALRRPGRF DRVVTVESPD 180
  181 KVGRESILKV HVSKKELPLG DDVNLASIAS MTTGFTGADL ANLVNEAALL AGRKSKMTVD 240
  241 KIDFIHAVER SIAGIEKKTA RLKGSEKAVV ARHEAGHAVV GTAVASLLSG QSRVEKLSIL 300
  301 PRSGGALGFT YIPPTHEDRY LLFIDELHGR LVTLLGGRAA EEVVYSGRIS TGALDDIRRA 360
  361 TDMAYKAVAE YGLNEKIGPV SVATLSAGGI DDSGGSPWGR DQGHLVDLVQ REVTNLLQSA 420
  421 LDVALTVVRA NPDVLEGLGA QLEDEEKVEG EELQKWLNRV VPSEELAVFI KGKQTALLPA 480
  481 QASSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 125.0
Match: 2ce7A
Description: EDTA treated
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle