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View Structure Prediction Details

Protein: SPY_ARATH
Organism: Arabidopsis thaliana
Length: 914 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for SPY_ARATH.

Predicted Domain #1
Region A:
Residues: [1-273]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGLEDDTER ERSPVVENGF SNGSRSSSSS AGVLSPSRKV TQGNDTLSYA NILRARNKFA  60
   61 DALALYEAML EKDSKNVEAH IGKGICLQTQ NKGNLAFDCF SEAIRLDPHN ACALTHCGIL 120
  121 HKEEGRLVEA AESYQKALMA DASYKPAAEC LAIVLTDLGT SLKLAGNTQE GIQKYYEALK 180
  181 IDPHYAPAYY NLGVVYSEMM QYDNALSCYE KAALERPMYA EAYCNMGVIY KNRGDLEMAI 240
  241 TCYERCLAVS PNFEIAKNNM AIALTDLGTK VKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 77.221849
Match: 1w3bA
Description: The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [274-914]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGDVTQGVAY YKKALYYNWH YADAMYNLGV AYGEMLKFDM AIVFYELAFH FNPHCAEACN  60
   61 NLGVLYKDRD NLDKAVECYQ MALSIKPNFA QSLNNLGVVY TVQGKMDAAA SMIEKAILAN 120
  121 PTYAEAFNNL GVLYRDAGNI TMAIDAYEEC LKIDPDSRNA GQNRLLAMNY INEGLDDKLF 180
  181 EAHRDWGWRF TRLHPQYTSW DNLKDPERPI TIGYISPDFF THSVSYFIEA PLTHHDYTKY 240
  241 KVVVYSAVVK ADAKTYRFRD KVLKKGGVWK DIYGIDEKKI ASMVREDKID ILVELTGHTA 300
  301 NNKLGTMACR PAPVQVTWIG YPNTTGLPTV DYRITDSLAD PPDTKQKQVE ELVRLPDCFL 360
  361 CYTPSPEAGP VCPTPALSNG FVTFGSFNNL AKITPKVLQV WARILCAVPN SRLVVKCKPF 420
  421 CCDSIRQRFL TTLEQLGLES KRVDLLPLIL FNHDHMQAYS LMDISLDTFP YAGTTTTCES 480
  481 LYMGVPCVTM AGSVHAHNVG VSLLTKVGLG HLVAKNEDEY VQLSVDLASD VTALSKLRMS 540
  541 LRDLMAGSPV CNGPSFAVGL ESAYRNMWKK YCKGEVPSLR RMEMLQKEVH DDPLISKDLG 600
  601 PSRVSVTGEA TPSLKANGSA PVPSSLPTQS PQLSKRMDST S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 106.0
Match: 2vsnA
Description: No description for 2vsnA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle