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View Structure Prediction Details

Protein: PTR40_ARATH
Organism: Arabidopsis thaliana
Length: 516 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTR40_ARATH.

Description E-value Query
Range
Subject
Range
PTR1_ARATH - Protein NRT1/ PTR FAMILY 8.1 OS=Arabidopsis thaliana GN=NPF8.1 PE=1 SV=1
249.0 [0..3] [502..7]

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Predicted Domain #1
Region A:
Residues: [1-425]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSVDTEAM TTRDPSSKRG GWKTFPFMIA TLLGLSIASF GWVMNLVVFL IKEFNIKSIA  60
   61 ATQNSNIVNG CVSMLPVVAA ILADSFFGNI PVISVSAFIS LLGIILLTMI TSLDHLRPPP 120
  121 CETGSILCES PSKLQLGILY IALALVIIGS AGTRFTLASA GANQYEKPKE QGSFFNWYFL 180
  181 TLYTGAITGA TAIVYTQENA SWKLGFGLCA VANLISFIVF VSGKRYYKHD KPMGSPFTNL 240
  241 IRVVVAATRK RKAVISSREE DYHHGLGREG KTSSAMPSKS FRFFNRAALK TEDDSVNNNW 300
  301 RLCSVQEVED FKAVFRVLPL LLAIIFVSTP MVTQTSLIIL QALVTDRGLG PHFKIPAGSL 360
  361 QVIVIITACI VILMNNCLVY PMYQKLAHKP LTPLQKVGIG HVFIILSMAI SAIVEAKRLK 420
  421 TVTNG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.522879
Match: 2gfpA
Description: No description for 2gfpA was found.

Predicted Domain #2
Region A:
Residues: [426-516]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSMSVLWLHR DFIASVVIGI SFYLSTALIT LIQKTTKWLP NDINHGRVDN VYWLLVIVGV  60
   61 LNYFLVCAWF YRYRNLNDDD DQEQDPKDDT T

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle