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View Structure Prediction Details

Protein: gi|39545874, gi|...
Organism: Arabidopsis thaliana
Length: 186 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|39545874, gi|....

Description E-value Query
Range
Subject
Range
gi|44986178 - gi|44986178|gb|AAS54718.1| AGR228Cp [Ashbya gossypii ATCC 10895]
gi|45201324, gi|... - gi|45201324|ref|NP_986894.1| AGR228Cp [Ashbya gossypii ATCC 10895], gi|44986178|gb|AAS54718.1| AGR22...
175.0 [0..3] [186..1]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLSTSDTSS SYNYVIDDVI NKSRCDLVYN GELDESVLSQ IQSMWKTKMI QAGAMSGTIE  60
   61 TSSASIPTTP VIVQTTLQTP DAI

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 4.06
Match: 1rm1C
Description: Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [84-186]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLPEKKMSPK KESDGFYYIP QQDGARDEAI VDVDENEEPL NEDDDDEEDD IDDDDMNIQH  60
   61 LVMCQFDKVK RSKNKWECKF NAGVMQINGK NVLFSQATGD FNF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.221849
Match: 1rm1C
Description: Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex
Matching Structure (courtesy of the PDB):

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