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View Structure Prediction Details

Protein: GRF3_ARATH
Organism: Arabidopsis thaliana
Length: 398 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRF3_ARATH.

Description E-value Query
Range
Subject
Range
gi|26449924 - gi|26449924|dbj|BAC42083.1| unknown protein [Arabidopsis thaliana]
444.0 [0..1] [398..1]

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Predicted Domain #1
Region A:
Residues: [1-130]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLQLKQWRS QQQQQHQTES EEQPSAAKIP KHVFDQIHSH TATSTALPLF TPEPTSSKLS  60
   61 SLSPDSSSRF PKMGSFFSWA QWQELELQAL IYRYMLAGAA VPQELLLPIK KSLLHLSPSY 120
  121 FLHHPLQHLP 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [131-211]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT  60
   61 TVNATATSMA SSVAAAATTT T

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [212-304]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ATTTSTFAFG GGGGSEEVVG QGGSFFFSGS SNSSSELLHL SQSCSEMKQE SNNMNNKRPY  60
   61 ESHIGFSNNR SDGGHILRPF FDDWPRSSLQ EAD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [305-398]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSSSPMSSAT CLSISMPGNS SSDVSLKLST GNEEGARSNN NGRDQQNMSW WSGGGSNHHH  60
   61 HNMGGPLAEA LRSSSSSSPT SVLHQLGVST QAFH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle