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View Structure Prediction Details

Protein: NRT26_ARATH
Organism: Arabidopsis thaliana
Length: 542 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NRT26_ARATH.

Description E-value Query
Range
Subject
Range
NRT23_ARATH - High affinity nitrate transporter 2.3 OS=Arabidopsis thaliana GN=NRT2.3 PE=1 SV=1
270.0 [0..1] [542..1]

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Predicted Domain #1
Region A:
Residues: [1-542]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHNHSNEDG SIGTSLHGVT AREQVFSFSV QEDVPSSQAV RTNDPTAKFA LPVDSEHRAK  60
   61 VFKPLSFAKP HMRAFHLGWI SFFTCFISTF AAAPLVPVIR DNLDLTKTDI GNAGVASVSG 120
  121 AIFSRLAMGA VCDLLGARYG TAFSLMLTAP AVFSMSFVAD AGSYLAVRFM IGFCLATFVS 180
  181 CQYWTSVMFT GKIIGLVNGC AGGWGDMGGG VTQLLMPMVF HVIKLTGATP FTAWRFAFFI 240
  241 PGILQIVMGI LVLTLGQDLP DGNLSTLQKS GQVSKDKFSK VFWFAVKNYR TWILFMLYGF 300
  301 SMGVELTINN VISGYFYDRF NLTLHTAGII AASFGMANFF ARPFGGYASD VAARLFGMRG 360
  361 RLWILWILQT VGALFCIWLG RASSLPIAIL AMMLFSMGTQ AACGALFGVA PFVSRRSLGL 420
  421 ISGLTGAGGN FGSGVTQLLF FSSSRFSTAE GLSLMGVMAV VCSLPVAFIH FPQWGSMFLR 480
  481 PSQDGEKSKE EHYYGAEWTE EEKSLGLHEG SIKFAENSRS ERGRKAMLAD IPTPETGSPA 540
  541 HV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.69897
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle